Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001000.1 Corchorus capsularis cultivar CVL-1 contig01000, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1773
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.30


Found at i:1170 original size:93 final size:93

Alignment explanation


    Indices: 1059--1245  Score: 374
    Period size: 93  Copynumber: 2.0  Consensus size: 93

       1049 AAGGAAAAGG

                                                                             
       1059 AATTCTAACCTTGCTAATCAACTTTTATTCTAACCTTTCTCGATCTGCTCCGCCTCCAGCTTCAG
          1 AATTCTAACCTTGCTAATCAACTTTTATTCTAACCTTTCTCGATCTGCTCCGCCTCCAGCTTCAG

                                        
       1124 CAAGCAATTTCAACCTTTGGATCTTCTT
         66 CAAGCAATTTCAACCTTTGGATCTTCTT

                                                                             
       1152 AATTCTAACCTTGCTAATCAACTTTTATTCTAACCTTTCTCGATCTGCTCCGCCTCCAGCTTCAG
          1 AATTCTAACCTTGCTAATCAACTTTTATTCTAACCTTTCTCGATCTGCTCCGCCTCCAGCTTCAG

                                        
       1217 CAAGCAATTTCAACCTTTGGATCTTCTT
         66 CAAGCAATTTCAACCTTTGGATCTTCTT

             
       1245 A
          1 A

       1246 CAACATCCAA


Statistics
Matches: 94,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  93   94  1.00

ACGTcount: A:0.23, C:0.30, G:0.10, T:0.37


Consensus pattern (93 bp):   
AATTCTAACCTTGCTAATCAACTTTTATTCTAACCTTTCTCGATCTGCTCCGCCTCCAGCTTCAG
CAAGCAATTTCAACCTTTGGATCTTCTT
Done.