Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010001.1 Corchorus capsularis cultivar CVL-1 contig10022, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75834

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
820--885
28
2.4
28
92
2
107
36
9
6
48
1.60
12563--12691
63
2.0
64
98
1
251
33
17
16
33
1.92
26435--26460
3
8.7
3
100
0
52
0
34
0
65
0.93
29995--30025
13
2.4
13
94
0
53
64
0
3
32
1.09
41696--41726
16
1.9
16
93
0
53
9
19
6
64
1.45
41674--41801
59
2.2
59
94
1
222
16
23
3
57
1.54
41749--41783
16
2.2
16
89
0
52
11
25
5
57
1.56
41836--41932
46
2.1
46
98
0
185
45
8
6
40
1.59
43691--43740
22
2.3
22
79
3
57
8
24
32
36
1.84
43785--43913
15
8.5
15
69
19
74
51
1
1
45
1.20
43786--43926
43
3.2
43
70
22
114
48
1
1
48
1.19
43763--43913
30
5.1
28
71
18
94
51
1
2
44
1.23
43852--43925
15
5.2
14
73
12
53
45
2
1
50
1.24
43804--43916
13
8.8
13
69
24
62
51
1
1
45
1.22
44539--44563
6
4.2
6
100
0
50
16
16
0
68
1.22
47639--47757
40
3.0
40
72
14
118
48
7
20
23
1.74
47777--47883
32
3.3
33
81
7
103
53
2
19
24
1.59
47918--47992
34
2.2
34
83
4
89
50
1
22
25
1.57
48038--48074
14
2.6
14
95
0
65
48
5
24
21
1.71
48000--48295
56
5.5
56
71
19
188
55
2
22
19
1.56
48122--48235
7
16.3
7
77
0
120
57
2
24
14
1.50
48115--48239
35
3.6
35
96
0
223
58
2
23
16
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48032--48577
161
3.3
162
81
14
657
54
2
21
20
1.57
48283--48326
7
6.3
7
78
0
52
54
2
27
15
1.53
48185--48489
91
3.4
91
96
0
556
54
2
22
20
1.56
48448--48519
29
2.5
28
80
13
76
54
1
25
19
1.52
48474--48571
36
2.7
36
87
1
133
57
3
20
19
1.54
48574--48809
26
8.8
26
80
9
244
55
4
19
20
1.60
48574--48797
80
2.8
79
83
6
265
55
4
19
20
1.59
48574--48808
54
4.4
52
74
14
162
55
4
19
20
1.59
49604--49630
4
6.8
4
100
0
54
51
0
48
0
1.00
49629--49656
1
28.0
1
100
0
56
100
0
0
0
0.00
51333--51368
3
12.0
3
100
0
72
66
0
0
33
0.92
51806--51834
13
2.1
14
93
6
51
37
6
6
48
1.57
51831--51857
2
13.5
2
100
0
54
51
0
0
48
1.00
56523--56556
2
17.0
2
93
0
59
50
2
0
47
1.16
72047--72074
8
3.5
8
100
0
56
39
0
0
60
0.97
72178--72224
17
2.7
17
83
6
60
59
2
2
36
1.21
75315--75346
10
3.3
10
95
4
57
50
0
18
31
1.48
75313--75351
16
2.5
15
84
16
53
48
0
17
33
1.48

Tables:   1

The End!