Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010007.1 Corchorus capsularis cultivar CVL-1 contig10028, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46221

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
134--177
19
2.4
18
82
10
54
52
0
38
9
1.33
1116--1150
2
17.5
2
93
0
61
51
2
0
45
1.16
6780--6844
4
16.0
4
78
15
53
44
1
6
47
1.37
19709--19803
45
2.1
46
90
2
147
29
23
7
40
1.81
23531--23604
33
2.2
33
81
13
98
16
35
33
14
1.89
25168--25195
2
14.0
2
100
0
56
50
0
0
50
1.00
27232--27259
2
14.0
2
100
0
56
50
0
0
50
1.00
32107--32131
2
12.5
2
100
0
50
52
0
0
48
1.00
35313--35356
21
2.1
21
86
0
61
15
15
20
47
1.82
35395--35482
42
2.1
43
86
2
124
39
11
18
30
1.86
36726--36758
17
1.9
17
93
0
57
21
57
0
21
1.41
43287--43316
1
30.0
1
100
0
60
0
0
0
100
0.00

Tables:   1

The End!