Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010008.1 Corchorus capsularis cultivar CVL-1 contig10029, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67711

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--38
14
2.5
14
86
4
54
0
88
0
11
0.50
12326--12460
60
2.3
59
81
5
146
36
9
23
30
1.87
15442--15475
2
16.0
2
88
11
50
47
0
5
47
1.26
15442--15474
9
3.8
9
96
4
59
48
0
6
45
1.27
16389--16446
28
2.1
28
100
0
116
27
17
13
41
1.87
16622--16693
35
2.1
35
94
0
126
31
2
16
48
1.61
19760--19789
11
2.6
12
89
10
53
23
0
0
76
0.78
24702--24728
13
2.1
13
100
0
54
48
14
14
22
1.81
25463--25495
17
2.0
17
88
5
50
45
6
12
36
1.66
30120--30155
18
2.1
17
94
5
63
63
8
16
11
1.49
30747--30786
19
2.2
18
86
4
53
30
20
5
45
1.72
32638--32698
15
3.9
15
71
14
52
40
1
1
55
1.19
38909--39345
49
8.9
49
86
4
504
22
27
16
33
1.95
38920--39295
99
3.8
98
88
3
499
23
28
16
31
1.96
49995--50032
20
1.9
20
88
0
58
15
7
10
65
1.45
50196--52352
330
6.6
324
75
9
1621
33
14
15
36
1.88
57904--58015
42
2.7
42
95
4
203
45
4
5
44
1.46
58094--58131
3
12.7
3
100
0
76
34
0
0
65
0.93

Tables:   1

The End!