Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010010.1 Corchorus capsularis cultivar CVL-1 contig10031, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15904

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1660--1692
2
16.5
2
93
0
57
48
3
0
48
1.17
2538--2591
2
27.5
2
81
3
65
53
0
3
42
1.18
2676--2713
2
19.0
2
88
0
58
44
0
5
50
1.24
7416--7481
31
2.1
31
88
5
98
28
19
4
46
1.69
7604--7683
38
2.1
37
88
2
115
12
16
11
60
1.60
7685--7991
167
1.8
164
86
8
442
36
11
8
43
1.71
8006--8043
19
2.0
20
85
15
53
28
5
2
63
1.30
8214--8344
22
6.0
21
71
7
100
35
10
17
36
1.85
8245--8344
44
2.3
43
82
5
128
34
12
19
35
1.88
8212--8396
22
8.3
22
67
4
84
33
9
18
38
1.83
8430--8536
44
2.4
44
78
7
110
36
8
19
35
1.82
8432--8536
22
4.8
22
71
13
81
36
8
19
36
1.82
8582--8749
22
7.6
22
72
15
100
39
10
14
35
1.81
8669--8790
44
2.8
44
76
5
102
40
10
14
33
1.81
8644--8788
22
6.6
22
72
5
89
40
10
13
35
1.79
8889--8926
20
1.9
20
100
0
76
42
10
21
26
1.85
8938--9188
22
11.5
22
70
16
89
41
8
14
35
1.76
8914--9058
44
3.2
44
76
14
120
42
7
13
35
1.73
9063--9188
22
5.6
23
81
3
114
38
9
13
38
1.77
9704--9733
15
1.9
16
93
6
53
43
0
3
53
1.17
10089--12485
332
7.3
330
73
11
1430
33
13
14
37
1.86
12878--14529
334
4.9
331
76
8
1345
32
13
15
38
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12601--14490
672
2.9
655
76
10
1625
33
13
15
37
1.87
14846--15016
91
1.9
90
97
2
326
26
11
13
47
1.77

Tables:   1

The End!