Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010012.1 Corchorus capsularis cultivar CVL-1 contig10033, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19113

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1318--1421
22
4.9
22
70
9
72
37
13
9
39
1.77
1322--1476
62
2.5
62
89
2
222
35
12
9
41
1.76
1369--1939
22
26.3
21
68
13
132
34
16
10
39
1.82
1504--1549
24
2.0
24
91
4
76
26
10
6
56
1.58
2021--2119
22
4.5
22
79
5
85
31
13
13
42
1.82
2045--2123
22
3.7
21
81
1
86
32
13
12
40
1.83
2224--2317
38
2.5
37
79
3
116
55
8
21
14
1.66
5425--5483
31
1.9
31
82
0
73
54
11
5
28
1.58
5568--5673
53
2.0
53
96
0
194
39
11
15
33
1.83
6074--6930
437
2.0
435
84
2
1130
42
12
13
31
1.82
10417--11016
22
27.8
21
73
12
348
33
17
13
36
1.88
10417--11017
44
13.9
43
74
10
426
33
17
12
36
1.88
10528--10641
42
2.6
42
79
6
113
35
17
11
35
1.86
10417--11017
64
9.3
62
72
13
290
33
17
12
36
1.88
10418--11017
86
6.9
85
74
11
413
33
17
13
36
1.88
10682--11017
108
3.1
107
74
9
252
32
17
12
37
1.88
11406--11727
86
3.8
85
75
8
273
33
18
10
36
1.86
11569--11725
43
3.7
43
78
8
151
34
17
12
35
1.87
11424--11713
145
2.0
144
80
7
320
34
18
11
35
1.87
11399--11727
22
15.5
21
75
9
190
33
19
11
36
1.87
11591--11727
43
3.2
43
77
10
154
34
17
10
37
1.85

Tables:   1

The End!