Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010016.1 Corchorus capsularis cultivar CVL-1 contig10037, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4383
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.31


Found at i:427 original size:29 final size:30

Alignment explanation


    Indices: 366--429  Score: 78
    Period size: 29  Copynumber: 2.2  Consensus size: 30

        356 ACAAAAGAGC

                      *                 * 
        366 CCAAAATTGAGAGTTTAGAGGGCAAAACGT
          1 CCAAAATTGAAAGTTTAGAGGGCAAAACAT

                              *            
        396 CCAAAATT-AAAGTTTAGGGGGCAAGAA-AT
          1 CCAAAATTGAAAGTTTAGAGGGCAA-AACAT

                 
        425 CCAAA
          1 CCAAA

        430 CCGTACAAGT


Statistics
Matches: 30,  Mismatches: 3, Indels: 3
        0.83            0.08        0.08

Matches are distributed among these distances:
  29   20  0.67
  30   10  0.33

ACGTcount: A:0.44, C:0.14, G:0.23, T:0.19


Consensus pattern (30 bp):   
CCAAAATTGAAAGTTTAGAGGGCAAAACAT

Found at i:3751 original size:13 final size:13

Alignment explanation


    Indices: 3733--3758  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       3723 CAGAAGAACC

                         
       3733 TTATGACAAACAT
          1 TTATGACAAACAT

                         
       3746 TTATGACAAACAT
          1 TTATGACAAACAT

       3759 CACAAGGTTC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31


Consensus pattern (13 bp):   
TTATGACAAACAT
Done.