Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010018.1 Corchorus capsularis cultivar CVL-1 contig10039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11444
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.35


Found at i:7296 original size:20 final size:20

Alignment explanation


    Indices: 7267--7304  Score: 67
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       7257 TATTTAAGTT

                 *              
       7267 TAATGTTATTTAAGTTGATG
          1 TAATGGTATTTAAGTTGATG

                              
       7287 TAATGGTATTTAAGTTGA
          1 TAATGGTATTTAAGTTGA

       7305 ATATTGGAAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47


Consensus pattern (20 bp):   
TAATGGTATTTAAGTTGATG

Found at i:10904 original size:10 final size:10

Alignment explanation


    Indices: 10889--10919  Score: 62
    Period size: 10  Copynumber: 3.1  Consensus size: 10

      10879 AGCTGCAAAA

                      
      10889 CAATTAACAC
          1 CAATTAACAC

                      
      10899 CAATTAACAC
          1 CAATTAACAC

                      
      10909 CAATTAACAC
          1 CAATTAACAC

             
      10919 C
          1 C

      10920 TGAGTGGCAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   21  1.00

ACGTcount: A:0.48, C:0.32, G:0.00, T:0.19


Consensus pattern (10 bp):   
CAATTAACAC
Done.