Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010019.1 Corchorus capsularis cultivar CVL-1 contig10040, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60402

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
151--190
21
1.9
21
84
0
53
25
20
27
27
1.99
234--273
21
1.9
21
94
0
71
20
17
25
37
1.94
3237--3271
6
5.5
6
87
12
52
68
0
14
17
1.21
3226--3267
14
3.1
14
86
6
61
69
0
9
21
1.17
3748--3859
33
3.4
32
79
6
109
10
37
40
11
1.77
12569--12632
24
2.9
23
84
9
80
31
17
4
46
1.68
12618--12779
57
3.2
49
79
15
175
43
8
17
29
1.79
12656--12775
57
2.1
58
92
4
199
48
6
19
25
1.73
14338--14425
37
2.4
36
88
3
124
19
11
13
55
1.68
16906--17735
338
2.5
332
80
5
793
38
15
13
33
1.86
17903--17929
2
13.5
2
100
0
54
51
0
0
48
1.00
20617--21654
327
3.1
328
78
8
871
37
14
13
34
1.86
24652--24681
15
1.9
16
93
6
53
53
3
0
43
1.17
24913--24979
36
1.9
34
90
6
107
43
2
8
44
1.50
24918--24943
2
13.0
2
100
0
52
50
0
0
50
1.00
27730--27784
26
2.1
27
93
3
94
34
12
20
32
1.90
28700--28737
11
3.5
11
89
10
51
39
0
2
57
1.12
31387--31426
19
2.1
19
100
0
80
55
40
5
0
1.22
31382--31426
19
2.2
20
88
11
74
55
40
4
0
1.20
33088--33442
30
11.7
30
84
2
422
33
16
19
30
1.94
33428--33455
13
2.2
13
100
0
56
39
25
21
14
1.91
33398--33485
43
2.0
43
95
0
158
35
21
19
23
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33441--33639
30
6.6
30
93
0
308
32
20
19
27
1.97
33368--33515
73
2.0
73
92
0
242
34
20
18
25
1.96
52603--52633
15
2.1
15
100
0
62
45
19
12
22
1.84
52895--53085
95
2.0
95
93
0
328
40
19
22
17
1.91
54842--54869
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!