genome.fa.s10020.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010020.1 Corchorus capsularis cultivar CVL-1 contig10041, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14386

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512--541	14	2.1	15	93	6	53	30	0	26	43	1.55
821--875	20	2.7	22	78	18	66	49	0	3	47	1.19
3736--3776	22	1.9	21	85	5	55	7	17	2	73	1.17
4818--4862	21	2.1	22	84	12	58	15	37	8	37	1.79
5126--5294	33	5.2	31	72	12	135	13	33	33	19	1.90
5155--5264	32	3.4	32	75	12	134	12	33	32	20	1.91
5146--5294	65	2.3	65	100	0	298	13	34	32	18	1.90
6217--6278	3	20.7	3	93	6	108	33	0	0	66	0.92
6709--6757	22	2.2	22	85	7	64	28	14	4	53	1.59
6920--7023	23	4.6	22	82	11	86	38	14	8	38	1.77
6961--7045	23	3.7	23	85	1	109	38	14	5	41	1.70
6944--7147	45	4.7	46	73	14	137	34	16	7	41	1.77
6944--7047	23	4.6	22	80	8	102	37	15	6	40	1.74
6922--7152	128	1.8	127	84	2	320	35	16	7	40	1.77
6730--7210	22	22.0	21	70	13	176	35	16	9	39	1.80
7161--7210	20	2.5	20	93	0	82	30	18	10	42	1.82
8423--8482	31	1.9	31	90	6	95	48	3	18	30	1.64
8645--9110	22	21.4	22	70	11	221	34	14	10	40	1.80
8882--8966	23	3.7	23	85	1	100	36	15	9	38	1.80
8863--8966	46	2.3	45	85	3	129	38	13	9	38	1.77
9238--9403	22	7.6	22	75	4	131	33	13	10	43	1.77
9213--9403	44	4.4	44	76	3	163	32	13	9	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9213--9379	88	1.9	88	83	4	221	32	13	10	43	1.79
9213--9403	88	2.2	88	81	6	210	32	13	9	43	1.76
9655--9791	22	6.1	22	76	9	116	38	18	9	33	1.83
9962--10004	19	2.2	20	84	16	54	62	2	6	27	1.33
10304--10370	31	2.1	32	83	10	93	46	4	16	32	1.67
10311--10376	31	2.1	31	88	5	98	46	4	19	28	1.69
10651--10695	21	2.1	21	88	8	65	55	6	2	35	1.38

Tables:   1

The End!