Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010024.1 Corchorus capsularis cultivar CVL-1 contig10045, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55523

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1002--1029
2
14.0
2
100
0
56
50
0
0
50
1.00
9538--9590
20
2.8
18
81
10
70
35
22
22
18
1.95
13238--13283
22
2.1
22
100
0
92
30
32
4
32
1.77
20448--20481
14
2.4
14
90
5
50
82
0
5
11
0.83
21647--21693
12
3.9
12
97
0
85
48
6
36
8
1.59
22007--22048
21
2.0
21
95
0
75
40
0
33
26
1.56
22009--22056
21
2.3
21
85
7
62
41
0
31
27
1.56
25851--25887
3
12.3
3
94
0
65
64
0
35
0
0.94
26450--26579
68
1.9
69
93
1
226
21
18
18
41
1.90
34101--34149
21
2.3
20
83
10
62
30
26
32
10
1.89
38661--38739
35
2.2
36
86
2
106
54
5
13
26
1.60
44348--44412
26
2.5
26
82
14
80
61
3
0
35
1.12
44597--44625
14
2.1
14
100
0
58
0
20
41
37
1.53
46512--46541
15
1.9
16
93
6
53
43
0
3
53
1.17
47398--47433
14
2.6
14
91
4
56
52
8
11
27
1.65
47429--47509
22
3.7
21
77
6
72
38
11
13
37
1.80
47457--47568
22
5.5
22
72
21
100
33
12
17
35
1.88
47525--47565
20
2.0
20
100
0
82
31
14
19
34
1.92
47728--47859
22
5.9
23
75
11
121
40
9
14
35
1.79
47798--47919
22
5.6
21
77
10
95
40
9
16
32
1.81
48071--48300
22
10.6
22
65
22
71
43
10
14
32
1.79
48028--48143
44
2.7
44
76
17
118
41
10
14
33
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50440--50528
40
2.2
40
97
2
169
38
19
5
37
1.75

Tables:   1

The End!