Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010025.1 Corchorus capsularis cultivar CVL-1 contig10046, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64902

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
404--433
13
2.3
13
100
0
60
86
0
0
13
0.57
3161--3500
35
9.7
35
85
8
424
39
10
17
33
1.82
3183--3350
19
9.5
17
69
18
110
41
11
13
33
1.81
11072--11241
86
2.0
84
81
4
198
31
27
5
35
1.81
14016--14094
31
2.5
32
76
13
92
43
5
7
44
1.54
14633--14684
25
2.1
25
85
0
68
34
1
28
34
1.69
16859--17163
102
3.0
101
86
3
398
34
11
18
35
1.87
19289--19347
31
1.9
31
85
0
82
23
40
18
16
1.91
19368--19422
28
2.0
28
100
0
110
25
29
7
38
1.83
31207--31231
1
25.0
1
100
0
50
100
0
0
0
0.00
46305--46375
35
2.0
37
83
8
94
47
0
5
46
1.26
46354--46395
20
2.2
19
91
4
66
45
0
2
52
1.13
46362--46406
13
3.4
14
76
14
51
48
0
2
48
1.13
46361--46407
2
26.0
2
76
20
50
48
0
2
48
1.13
48427--48723
109
2.7
109
92
5
461
37
11
1
49
1.48
50982--51013
16
2.0
16
93
0
55
53
6
12
28
1.62
55219--55271
27
2.0
27
85
7
74
39
9
1
49
1.46
56681--56706
2
13.0
2
100
0
52
50
0
0
50
1.00
57524--57640
58
2.0
58
94
0
207
33
11
14
40
1.83
59046--59074
14
2.1
14
100
0
58
41
20
6
31
1.79
62287--62321
2
17.5
2
100
0
70
48
0
0
51
1.00
63797--63879
29
2.8
28
75
16
87
20
26
15
37
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64822--64854
15
2.2
15
100
0
66
36
6
6
51
1.51

Tables:   1

The End!