Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010026.1 Corchorus capsularis cultivar CVL-1 contig10047, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2896
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30


Found at i:2086 original size:31 final size:29

Alignment explanation


    Indices: 2016--2101  Score: 111
    Period size: 29  Copynumber: 2.9  Consensus size: 29

       2006 GTTAAGAAAT

                                       * 
       2016 TGAAAGGTTTAGGACCAAATTGAGC-CGG
          1 TGAAAGGTTTAGGACCAAATTGAGCACCG

             *                   *          
       2044 TCAGAAGGTTTAGGACCAAATCGAGCAGACCG
          1 TGA-AAGGTTTAGGACCAAATTGAGC--ACCG

                                      
       2076 TGAAAGGTTTAGGACCAAATTGAGCA
          1 TGAAAGGTTTAGGACCAAATTGAGCA

       2102 TTTAGCCGCG


Statistics
Matches: 49,  Mismatches: 5, Indels: 7
        0.80            0.08        0.11

Matches are distributed among these distances:
  28    2  0.04
  29   22  0.45
  31   21  0.43
  32    4  0.08

ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20


Consensus pattern (29 bp):   
TGAAAGGTTTAGGACCAAATTGAGCACCG
Done.