genome.fa.s10035.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010035.1 Corchorus capsularis cultivar CVL-1 contig10056, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58483

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152--316	31	5.2	31	74	12	145	17	18	27	36	1.93
1760--2346	193	3.0	193	87	4	775	22	13	22	42	1.87
3151--3244	46	2.0	46	95	0	170	23	14	17	44	1.85
13462--13862	199	2.0	199	98	0	775	27	22	19	30	1.98
13874--13935	28	2.2	28	91	0	97	27	14	11	46	1.78
16302--16354	16	3.4	16	76	5	63	47	0	0	52	1.00
16300--16347	25	1.9	25	83	8	62	50	0	0	50	1.00
16318--16396	36	2.2	36	84	13	108	55	0	0	44	0.99
19496--19527	11	2.9	11	100	0	64	28	53	0	18	1.45
29963--29990	5	5.6	5	100	0	56	39	21	17	21	1.93
40404--40748	84	4.0	85	95	3	588	28	11	14	46	1.79
41046--41075	13	2.3	13	94	0	51	50	0	16	33	1.46
42409--42464	28	2.0	28	100	0	112	42	7	21	28	1.79
50312--50358	21	2.2	21	84	0	67	6	17	17	59	1.57
50437--50493	30	1.9	30	89	7	89	21	35	38	5	1.76
50659--50766	34	3.4	34	69	21	106	46	9	33	11	1.71
50642--50765	61	2.0	61	96	0	230	49	9	29	12	1.72
51743--51773	16	1.9	16	93	0	53	35	9	0	54	1.33
52435--52858	202	2.1	202	90	3	656	34	18	12	33	1.89
53913--53944	14	2.3	14	94	0	55	37	9	0	53	1.34
54478--54516	20	1.9	21	94	5	71	30	10	7	51	1.64
54596--54684	42	2.1	42	97	0	169	34	7	23	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56518--56673	58	2.7	58	82	8	167	33	17	21	27	1.96
56539--56673	57	2.4	55	81	10	155	34	17	21	27	1.95

Tables:   1

The End!