Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010037.1 Corchorus capsularis cultivar CVL-1 contig10058, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59748

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4381--4441
30
2.1
29
84
3
77
18
21
14
45
1.84
6468--6553
45
1.9
45
85
0
118
24
4
13
56
1.56
15175--15301
31
4.2
30
81
5
132
16
25
28
29
1.97
18482--18536
27
2.1
27
83
10
69
41
7
34
16
1.76
18615--18654
21
1.9
21
89
0
62
30
5
30
35
1.79
19223--19270
22
2.3
20
86
10
62
39
25
16
18
1.91
19254--19312
31
1.9
31
85
0
82
33
25
22
18
1.96
20902--20993
46
2.0
46
93
0
157
41
16
15
27
1.88
21614--21766
79
1.9
79
100
0
306
33
15
18
32
1.92
26632--26666
16
2.2
16
89
0
52
57
5
25
11
1.56
27827--27851
6
4.2
6
100
0
50
16
20
0
64
1.30
29704--29761
18
3.2
18
75
0
62
41
0
48
10
1.37
29701--29771
24
3.0
24
73
8
81
43
0
47
8
1.33
32800--32898
49
2.0
49
100
0
198
30
18
20
31
1.96
40415--40460
17
2.8
17
87
12
62
54
2
0
43
1.12
40425--40455
11
2.8
11
100
0
62
54
0
0
45
0.99
46664--46702
13
2.9
13
82
17
53
43
2
0
53
1.14
50812--50907
9
10.3
9
72
14
70
51
4
41
3
1.37
50812--50907
3
32.0
3
73
4
50
51
4
41
3
1.37
54223--54268
22
2.1
22
87
0
65
21
23
23
30
1.99
55856--55937
31
2.6
32
84
3
105
36
17
17
29
1.92
57081--57139
25
2.5
24
88
5
84
35
22
0
42
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57149--57216
26
2.6
26
90
0
109
54
10
1
33
1.43
57155--57268
11
9.2
12
67
24
51
56
7
1
34
1.39
58731--59268
35
15.5
35
84
6
619
35
17
16
30
1.92
58731--59268
176
3.1
173
86
7
700
35
17
16
30
1.92
59168--59229
30
2.1
30
93
0
106
38
20
12
27
1.90

Tables:   1

The End!