Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010039.1 Corchorus capsularis cultivar CVL-1 contig10060, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84660

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1873--1919
2
23.5
2
100
0
94
51
0
48
0
1.00
13261--13286
11
2.4
11
100
0
52
0
0
15
84
0.62
16439--16765
165
2.0
164
86
6
455
37
10
8
43
1.70
16779--16816
19
2.0
20
85
15
53
28
5
2
63
1.30
16983--17188
22
9.3
22
77
13
133
33
8
18
38
1.82
17050--17154
44
2.3
44
90
3
156
37
10
15
37
1.82
17258--17362
22
4.8
22
74
12
74
36
4
19
40
1.72
17265--17362
44
2.2
44
82
8
112
36
5
18
39
1.73
17387--17485
21
4.5
22
74
15
71
43
9
13
34
1.75
17387--17438
20
2.5
20
81
6
59
40
9
15
34
1.80
17368--17605
22
11.3
21
66
17
79
43
11
13
31
1.80
17726--17997
22
12.5
21
69
16
119
40
9
13
36
1.78
17707--18134
44
9.8
43
70
13
227
38
10
14
36
1.80
17727--17851
66
1.9
66
80
6
146
42
10
11
36
1.75
17942--18010
22
3.1
22
89
0
84
37
8
14
39
1.77
18210--18270
22
2.8
22
82
9
63
40
8
6
44
1.60
18989--19032
19
2.2
20
84
11
56
29
4
6
59
1.44
57573--57773
111
1.8
111
97
0
384
21
29
7
41
1.80
65327--65353
12
2.2
12
100
0
54
0
7
14
77
0.97
66123--66161
20
2.0
20
100
0
78
25
23
25
25
2.00
73678--73714
17
2.1
19
90
10
60
59
0
0
40
0.97
78063--78160
48
2.0
48
86
3
135
39
26
15
18
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78079--78156
24
3.2
24
70
0
66
39
26
16
16
1.90

Tables:   1

The End!