Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010041.1 Corchorus capsularis cultivar CVL-1 contig10062, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52942

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
521--570
5
9.6
5
97
2
82
42
0
0
58
0.98
524--630
2
54.5
2
71
17
64
45
4
3
45
1.42
10625--10804
100
1.8
100
92
0
306
30
8
22
38
1.84
16467--16534
33
2.1
33
94
0
118
48
5
8
36
1.59
20421--20468
12
4.0
12
94
0
78
35
25
27
12
1.92
21081--21125
21
2.1
22
91
4
74
68
15
6
8
1.36
21114--21224
54
2.1
54
96
0
204
45
26
12
15
1.81
21779--21808
3
10.0
3
100
0
60
66
0
0
33
0.92
30269--30339
37
1.9
37
91
0
115
39
7
16
36
1.76
30973--30999
2
13.5
2
100
0
54
51
0
0
48
1.00
31544--31607
31
2.0
32
85
8
87
39
6
18
35
1.76
32802--32872
37
1.9
37
94
0
124
38
8
16
36
1.80
34193--34231
18
2.2
18
95
0
69
48
5
7
38
1.54
44057--44116
29
2.0
30
84
9
79
30
21
11
36
1.89
49709--49733
12
2.1
12
100
0
50
32
16
40
12
1.84

Tables:   1

The End!