Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010049.1 Corchorus capsularis cultivar CVL-1 contig10070, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9797

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
480--553
31
2.4
31
90
0
121
37
18
25
17
1.93
534--606
30
2.4
29
82
11
85
32
5
27
34
1.80
1337--1384
3
15.7
3
91
4
78
64
2
0
33
1.05
1468--1537
36
1.9
37
94
2
124
42
8
30
18
1.80
4366--4460
46
2.0
47
91
2
156
10
8
13
67
1.42
6000--6029
2
15.0
2
92
0
51
50
3
0
46
1.18
6341--6370
4
7.5
4
92
0
51
20
0
26
53
1.46
6148--6350
104
2.0
103
92
2
336
36
2
20
39
1.68
7852--7981
22
5.8
22
75
7
109
33
10
16
40
1.81
8032--8165
22
6.2
20
73
13
97
38
8
17
35
1.80
8031--8130
44
2.3
43
81
10
114
37
9
18
36
1.82
8171--8442
22
12.5
22
71
12
125
41
10
14
33
1.81
8457--8664
22
9.6
21
66
18
95
41
7
13
36
1.74
8525--8959
44
10.0
44
71
10
232
37
9
15
37
1.80
8694--8800
23
4.8
22
80
6
99
39
9
14
37
1.78
8715--8800
23
3.8
23
87
1
111
37
9
15
38
1.79
8694--8799
45
2.3
44
82
9
133
39
9
13
37
1.77
8525--8830
22
14.1
22
71
11
116
40
8
15
36
1.77
8861--8923
22
2.8
22
74
11
56
30
12
19
38
1.89
8861--8945
45
1.9
44
83
7
109
31
11
18
37
1.87
8966--9020
22
2.5
21
82
8
65
52
5
10
30
1.59
8980--9020
22
1.9
21
95
5
73
56
2
12
29
1.49

Tables:   1

The End!