Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010050.1 Corchorus capsularis cultivar CVL-1 contig10071, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98392

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
348--379
2
16.0
2
100
0
64
50
0
0
50
1.00
21962--21990
14
2.0
15
93
6
51
68
13
13
3
1.33
24336--24375
21
1.9
21
84
0
53
10
12
5
72
1.26
27871--27896
5
5.2
5
100
0
52
61
0
0
38
0.96
30915--30954
21
1.9
21
100
0
80
25
5
25
45
1.73
41310--41334
6
4.2
6
100
0
50
48
32
20
0
1.50
41384--41419
18
2.0
18
88
0
54
36
19
19
25
1.95
44712--44741
2
15.0
2
100
0
60
50
0
50
0
1.00
44928--44957
14
2.1
14
93
0
51
86
3
10
0
0.67
44934--44967
15
2.1
17
89
10
54
85
0
14
0
0.60
44934--44967
16
2.1
17
88
5
52
85
0
14
0
0.60
45294--45322
15
1.9
15
100
0
58
27
6
0
65
1.18
50395--50424
13
2.2
14
94
5
53
36
13
3
46
1.60
60027--60055
14
2.1
14
100
0
58
44
6
6
41
1.58
81438--81515
29
2.6
30
80
10
79
38
29
14
17
1.89
82969--83015
20
2.3
21
85
7
69
53
19
4
23
1.63
83335--83755
221
1.9
214
83
6
542
34
24
19
21
1.96
85773--85802
15
2.0
15
100
0
60
26
20
20
33
1.97
87158--87197
12
3.2
12
85
3
53
30
52
12
5
1.60
92825--92953
66
2.0
65
93
1
222
25
21
20
32
1.97
95014--95274
107
2.5
104
81
9
336
41
7
9
41
1.65
97336--97408
32
2.3
32
97
0
137
17
35
35
10
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97551--97625
32
2.3
33
84
6
91
13
41
36
9
1.76

Tables:   1

The End!