Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010052.1 Corchorus capsularis cultivar CVL-1 contig10073, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8839

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6636--6713
22
3.5
22
70
19
63
42
11
8
37
1.73
6856--6912
22
2.7
21
75
5
60
43
10
7
38
1.66
6944--7042
44
2.2
44
96
0
180
36
16
13
34
1.87
6944--7012
22
3.1
22
65
8
59
39
17
13
30
1.87
6964--7034
22
3.2
21
67
11
54
38
18
8
35
1.81
6973--7047
22
3.2
25
64
21
63
34
20
10
34
1.87
7059--7169
22
5.1
22
81
8
86
37
14
8
39
1.76
7072--7170
22
4.6
22
85
11
107
35
14
9
41
1.77
7117--7193
22
3.6
22
83
8
72
37
15
7
38
1.77
7270--7325
22
2.5
22
80
8
78
35
17
8
37
1.82
8093--8121
14
2.1
14
100
0
58
6
0
41
51
1.28
8183--8233
21
2.5
21
81
6
61
45
0
1
52
1.12
8192--8233
19
2.1
21
86
8
61
45
0
0
54
0.99
8341--8407
31
2.1
32
86
5
100
49
5
16
28
1.69
8348--8413
31
2.1
31
91
0
105
50
6
19
24
1.70
8462--8489
2
14.0
2
100
0
56
50
50
0
0
1.00
8641--8670
13
2.4
13
94
5
53
50
0
0
50
1.00

Tables:   1

The End!