Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010055.1 Corchorus capsularis cultivar CVL-1 contig10076, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45208

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
440--476
14
2.6
14
91
0
56
21
21
0
56
1.42
2247--2543
113
2.7
108
82
5
330
35
18
23
22
1.96
2250--2583
113
3.0
112
80
6
297
34
19
23
22
1.96
3410--3444
18
1.9
18
94
0
61
48
20
5
25
1.71
15474--15506
13
2.4
14
90
10
50
6
42
6
45
1.53
15474--15506
15
2.2
15
100
0
66
6
42
6
45
1.53
17355--17393
15
2.4
17
79
20
55
28
10
33
28
1.90
17365--17393
15
1.9
15
100
0
58
27
13
31
27
1.94
18368--18409
21
2.0
21
100
0
84
28
28
14
28
1.95
20279--20358
41
2.0
41
94
0
142
36
12
7
43
1.71
20295--20370
21
3.7
21
68
10
75
36
9
5
48
1.58
23781--23853
35
2.1
35
87
5
105
21
20
2
54
1.57
23814--24214
212
1.9
204
90
6
641
26
21
13
38
1.91
24100--24515
188
2.2
186
86
5
563
32
22
16
29
1.96
24100--24515
97
4.4
97
81
7
450
32
22
16
29
1.96
30420--30451
16
2.0
16
100
0
64
37
12
6
43
1.68
37919--38002
31
2.7
31
83
0
114
35
25
14
25
1.93
41668--41694
1
27.0
1
100
0
54
0
0
0
100
0.00
42631--42663
7
5.0
7
96
3
52
39
0
0
60
0.97
44767--44800
16
2.1
16
88
0
50
61
17
0
20
1.34

Tables:   1

The End!