genome.fa.s10061.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010061.1 Corchorus capsularis cultivar CVL-1 contig10082, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125072

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
800--865	31	2.1	31	88	5	96	30	30	9	30	1.88
3547--3594	22	2.2	22	88	3	71	29	14	0	56	1.39
3580--3983	22	18.5	22	70	14	166	35	16	10	36	1.83
3752--3836	23	3.7	23	80	1	91	36	14	8	41	1.75
4108--4506	22	18.0	22	69	12	154	34	16	9	40	1.80
4083--4249	88	1.9	88	81	4	203	33	14	10	41	1.80
4591--4744	22	7.0	22	75	8	134	37	14	11	37	1.81
4535--4743	66	3.1	66	79	6	215	38	16	9	35	1.81
4570--4740	44	3.9	43	79	7	164	36	14	11	38	1.81
6158--6225	31	2.2	32	81	10	86	48	5	14	30	1.68
6166--6227	31	2.0	32	90	6	101	46	6	17	29	1.73
11656--11681	13	2.0	13	100	0	52	30	23	0	46	1.53
13393--13422	13	2.2	14	94	5	53	46	20	13	20	1.83
16172--16196	12	2.1	12	100	0	50	40	32	8	20	1.81
27483--27595	33	3.4	33	84	4	129	5	23	23	47	1.72
27685--27905	33	6.7	33	82	3	232	5	45	12	36	1.67
27685--27900	99	2.2	99	87	1	308	6	45	12	36	1.66
27922--28202	66	4.3	66	91	0	418	12	30	20	36	1.90
27922--28238	66	4.8	64	88	2	366	13	29	19	37	1.90
29960--30021	31	2.0	31	90	0	97	25	19	8	46	1.77
30176--30344	54	3.1	52	70	21	141	38	7	2	52	1.42
34574--34605	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47485--47511	9	3.0	9	100	0	54	44	22	33	0	1.53
71390--71420	16	1.9	16	100	0	62	12	35	12	38	1.82
83422--83465	22	2.0	22	100	0	88	45	9	9	36	1.68
86878--86909	16	2.0	16	93	0	55	71	18	9	0	1.12
87836--88242	51	8.1	50	80	5	435	42	5	15	36	1.70
87838--88242	101	4.0	102	90	3	601	42	5	15	36	1.70
87836--88238	152	2.7	150	80	5	454	41	5	15	36	1.70
88936--89022	26	3.2	26	64	20	70	49	4	20	25	1.68
88909--89373	55	8.5	55	90	1	682	48	6	20	25	1.73
89510--89693	72	2.5	72	89	2	262	49	5	17	26	1.70
89571--89693	40	3.2	40	70	20	111	48	5	17	27	1.70
89894--90159	22	12.1	22	72	11	156	54	6	20	18	1.65
90002--90145	23	6.5	22	67	16	64	54	6	22	16	1.64
89960--90163	88	2.3	89	77	9	229	55	5	21	17	1.63
90100--90161	21	3.0	21	85	7	90	61	6	17	14	1.53
90139--90189	15	3.5	15	71	10	52	58	5	19	15	1.57
89917--90161	43	5.6	43	76	7	197	55	6	20	17	1.65
91056--91452	101	3.9	102	88	1	555	35	16	16	31	1.91
91056--91435	203	1.9	204	87	1	557	35	16	16	32	1.91
91961--91989	14	2.1	14	100	0	58	27	6	31	34	1.83
94652--94795	72	2.0	73	94	2	254	20	15	22	40	1.91
97915--98239	171	1.9	170	98	0	632	45	15	14	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100122--100411	109	2.7	109	91	5	455	49	1	11	38	1.47
112993--113095	51	2.0	51	100	0	206	29	9	5	55	1.56
115067--115233	75	2.2	74	83	7	203	43	20	10	25	1.83
123477--123512	18	2.0	18	100	0	72	5	33	33	27	1.80
123781--123816	16	2.2	16	95	0	63	25	2	5	66	1.27

Tables:   1

The End!