genome.fa.s10063.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010063.1 Corchorus capsularis cultivar CVL-1 contig10084, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57135

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393--485	31	3.1	31	87	9	138	34	13	11	39	1.82
2203--2285	42	2.0	41	92	2	139	26	14	24	34	1.94
6696--6755	21	2.9	22	65	23	56	25	10	25	40	1.86
11667--11715	23	2.1	23	100	0	98	44	8	12	34	1.71
13005--13045	17	2.4	16	84	11	55	19	12	31	36	1.89
22191--22273	42	2.0	43	85	7	116	37	22	16	22	1.94
27691--27916	116	2.0	110	89	8	343	26	17	5	51	1.66
29120--29178	31	2.0	31	86	6	86	50	13	18	16	1.77
29301--29437	31	4.5	30	80	3	141	32	17	10	38	1.85
29479--29504	3	8.7	3	100	0	52	65	0	0	34	0.93
30479--30554	31	2.5	31	97	0	143	36	9	18	35	1.83
30673--30739	31	2.2	31	86	5	93	20	19	10	49	1.77
32094--32175	32	2.6	32	84	3	105	36	21	3	37	1.72
32094--32173	31	2.6	31	86	4	99	37	21	3	37	1.71
35917--36191	109	2.5	109	93	4	455	49	1	10	38	1.47
40683--40737	26	2.1	27	89	3	85	45	0	0	54	0.99
40790--40851	30	2.0	31	93	3	108	32	12	3	51	1.56
40858--40910	19	2.8	19	77	5	54	37	5	0	56	1.23
40938--41069	22	5.9	22	80	10	99	33	10	18	37	1.86
40967--41076	22	4.9	22	83	4	103	33	9	19	38	1.83
41153--41223	22	3.2	22	67	11	56	38	11	16	33	1.85
41196--41480	22	12.8	22	66	17	79	42	9	13	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41335--41502	44	3.8	43	77	7	160	42	10	11	35	1.77
41334--41480	66	2.2	66	81	2	161	41	10	12	35	1.77
41339--41505	88	1.9	88	83	4	221	42	10	12	34	1.78
41586--41652	19	3.5	19	85	2	80	46	10	17	25	1.80
41643--42182	22	24.7	22	67	14	140	40	9	13	37	1.76
41812--41915	23	4.6	23	79	3	95	38	7	13	40	1.73
42011--42182	68	2.6	65	74	11	161	41	11	12	34	1.78
42320--42344	5	5.0	5	100	0	50	60	0	0	40	0.97
54788--54951	32	5.0	33	85	4	174	12	30	39	17	1.87
55305--55449	4	36.5	4	72	8	55	63	2	5	28	1.28
55307--55448	12	11.9	12	71	7	92	62	2	5	29	1.29
55348--55407	18	3.3	18	76	17	70	71	1	6	20	1.17
55416--55440	2	12.5	2	100	0	50	52	0	0	48	1.00
55498--55562	17	4.2	17	79	16	63	58	3	6	32	1.38
55510--55562	27	2.0	27	85	7	72	60	3	5	30	1.37
55608--55642	18	2.0	17	94	5	61	68	0	5	25	1.11

Tables:   1

The End!