Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010066.1 Corchorus capsularis cultivar CVL-1 contig10087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23346

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5986--6027
18
2.3
18
88
8
59
14
16
11
57
1.66
10889--10932
12
3.7
12
76
11
54
38
18
13
29
1.89
11350--11384
4
8.5
4
87
6
52
25
2
0
71
1.00
11351--11390
12
3.2
12
89
3
53
32
2
0
65
1.06
12951--13073
61
2.0
61
95
0
219
40
16
17
25
1.90
14299--14337
12
3.2
12
88
0
60
76
7
7
7
1.15
14297--14347
24
2.2
24
85
3
68
80
5
7
5
1.02
15670--16031
63
5.7
62
76
8
300
25
24
14
35
1.93
15675--15830
62
2.5
63
91
1
242
26
23
15
34
1.94
20652--20706
29
1.9
29
85
3
76
52
1
21
23
1.56
22139--22185
23
2.0
23
100
0
94
31
17
12
38
1.87
22261--22380
59
2.0
59
80
3
134
38
5
7
49
1.53

Tables:   1

The End!