Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010067.1 Corchorus capsularis cultivar CVL-1 contig10088, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51384

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
700--773
31
2.5
31
86
4
98
28
18
10
41
1.84
897--966
31
2.3
29
82
4
77
41
14
14
30
1.85
1121--1180
11
5.2
12
79
16
74
8
23
10
58
1.57
1121--1178
23
2.6
23
79
17
68
8
22
10
58
1.58
5904--6007
54
1.9
54
90
5
165
36
13
19
30
1.90
6082--6131
2
25.0
2
89
0
73
4
2
44
50
1.32
8387--8426
19
2.0
20
90
4
64
55
0
0
45
0.99
8399--8442
23
1.9
23
86
9
63
56
0
2
40
1.11
8479--8515
11
3.2
12
85
14
51
29
0
2
67
1.04
13931--13987
29
2.0
29
82
6
71
35
15
12
36
1.85
14585--14637
24
2.1
26
93
6
92
28
13
28
30
1.94
21452--21500
23
2.1
23
100
0
98
48
8
12
30
1.69
23580--23604
3
8.3
3
100
0
50
68
0
0
32
0.90
29664--29724
32
1.9
32
96
0
113
39
14
16
29
1.88
37938--38011
30
2.5
30
84
8
105
31
22
27
18
1.98
38018--38085
29
2.3
29
89
0
109
32
22
29
16
1.95
46896--47108
106
2.0
108
85
8
290
41
18
11
28
1.85
48355--48387
2
16.5
2
93
0
57
51
3
0
45
1.16

Tables:   1

The End!