genome.fa.s10069.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010069.1 Corchorus capsularis cultivar CVL-1 contig10090, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104297

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2289--2364	28	2.6	30	77	10	84	27	23	14	34	1.94
5566--5600	18	1.9	18	88	0	52	37	20	8	34	1.83
7049--7104	12	4.6	12	88	4	85	28	23	12	35	1.91
7064--7098	13	2.8	13	91	4	54	28	22	11	37	1.89
7049--7104	25	2.3	24	90	3	85	28	23	12	35	1.91
7162--7232	31	2.3	31	80	7	81	30	15	2	50	1.58
7218--7278	29	2.1	27	85	14	79	44	8	0	47	1.33
17028--17052	13	1.9	13	100	0	50	0	16	0	84	0.63
34237--34293	30	1.9	30	85	0	78	26	28	10	35	1.89
39627--39656	12	2.5	12	100	0	60	43	23	10	23	1.83
45024--45061	2	19.5	2	94	5	69	50	0	0	50	1.00
48826--48883	29	2.0	29	89	0	89	34	12	13	39	1.82
48931--48976	4	11.8	4	84	11	60	30	21	0	47	1.51
48939--48978	18	2.2	19	90	4	64	32	20	0	47	1.50
49226--49278	15	3.4	15	77	15	54	41	0	3	54	1.18
49534--49568	14	2.5	14	90	9	54	34	14	5	45	1.68
54502--54562	29	2.1	29	87	0	86	42	14	8	34	1.76
54840--54874	13	2.6	14	90	4	54	62	34	2	0	1.10
56448--59110	330	8.1	328	76	8	2122	32	13	15	37	1.87
56482--59093	662	4.0	654	77	8	2073	32	13	15	37	1.87
63339--63369	11	2.8	11	95	0	53	61	3	0	35	1.12
63891--64265	205	1.8	205	91	2	628	25	17	20	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64743--64812	30	2.4	30	82	2	88	25	11	25	37	1.90
69129--69154	13	2.0	13	100	0	52	46	0	7	46	1.31
69840--69886	17	3.1	15	80	17	60	14	27	6	51	1.67
74068--74205	36	3.8	36	84	5	165	19	12	26	42	1.86
78434--78463	11	2.8	11	95	5	53	30	13	36	20	1.90
81518--81542	9	2.8	9	100	0	50	32	20	0	48	1.50
90130--90157	12	2.3	12	100	0	56	25	10	25	39	1.87
96116--96144	3	9.7	3	100	0	58	68	0	0	31	0.89
99330--99371	21	2.0	21	95	0	75	40	7	23	28	1.81
102559--102697	72	1.9	72	89	2	217	12	33	28	25	1.93
103306--103536	97	2.4	98	92	0	374	13	32	23	30	1.93
103436--103606	73	2.4	73	88	1	200	11	31	23	32	1.91
103530--103807	98	2.8	98	91	0	450	11	30	25	32	1.90
103831--103886	24	2.3	24	87	0	85	17	32	16	33	1.92
103757--103959	98	2.1	97	94	0	361	12	32	21	33	1.91
103618--104297	171	4.0	172	77	8	616	11	31	23	33	1.90
103855--104125	73	3.7	73	89	2	391	11	31	22	34	1.89
103747--104227	245	2.0	245	87	3	700	11	31	23	33	1.91
103862--104129	147	1.8	147	92	0	455	11	31	22	34	1.90
104041--104297	98	2.6	98	87	4	392	11	31	24	32	1.91

Tables:   1

The End!