Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010071.1 Corchorus capsularis cultivar CVL-1 contig10092, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57312

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5171--7507
331
7.1
328
77
7
2174
36
15
13
34
1.87
5171--7585
663
3.6
656
79
7
2388
36
15
14
34
1.88
13276--13352
29
2.6
28
71
20
68
23
22
14
40
1.90
13781--13836
29
2.0
29
89
3
87
44
12
21
21
1.85
19237--19342
52
2.0
53
94
1
187
41
5
10
42
1.62
24496--24527
16
2.1
15
94
5
55
68
0
31
0
0.90
25529--25610
30
2.8
29
81
10
96
23
19
13
43
1.86
25550--25613
28
2.3
27
81
10
74
26
17
14
42
1.87
25654--25723
32
2.2
31
84
2
86
15
27
27
30
1.96
25976--26000
13
1.9
13
100
0
50
44
8
24
24
1.80
29058--29152
34
2.7
36
85
12
151
34
8
17
38
1.80
37509--37582
36
2.1
36
100
0
148
21
17
18
41
1.90
37521--37578
18
3.2
18
68
18
57
24
13
17
44
1.85
46491--46531
3
13.7
3
84
0
55
0
31
2
65
1.05
52216--54074
333
5.6
331
78
7
1659
33
13
15
37
1.87
52216--54077
658
2.8
653
78
7
1803
32
13
15
37
1.87
56175--56470
109
2.7
109
91
3
457
37
10
1
50
1.48

Tables:   1

The End!