Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010075.1 Corchorus capsularis cultivar CVL-1 contig10096, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
925--956
2
16.0
2
100
0
64
50
0
0
50
1.00
2169--6985
332
14.4
325
74
10
2891
37
15
13
33
1.87
7139--7207
30
2.3
30
97
0
129
39
5
7
47
1.55
7362--7391
15
1.9
16
93
6
53
53
3
0
43
1.17
9970--10128
85
1.9
85
95
0
291
52
1
13
33
1.48
11741--11926
106
1.8
100
86
6
264
44
10
10
34
1.73
14896--14920
12
2.1
12
100
0
50
24
8
36
32
1.84
16820--16894
39
1.9
39
86
0
105
46
14
10
28
1.78
18150--18174
10
2.5
10
100
0
50
92
8
0
0
0.40
21995--22038
14
2.9
15
83
13
54
15
29
0
54
1.42
22110--22193
33
2.6
33
84
1
98
11
34
36
16
1.86
25697--25749
27
2.0
27
85
7
74
39
9
1
49
1.46

Tables:   1

The End!