Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010078.1 Corchorus capsularis cultivar CVL-1 contig10099, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  184184

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26284--26314
2
16.0
2
93
6
55
51
0
0
48
1.00
30318--30346
3
9.7
3
100
0
58
31
0
0
68
0.89
36375--36424
25
2.0
25
92
0
82
40
20
12
28
1.87
36486--36524
17
2.3
17
82
8
53
43
2
7
46
1.46
38375--38409
10
3.5
10
96
0
61
85
0
0
14
0.59
38375--38415
11
3.7
11
90
6
57
82
0
2
14
0.76
38464--38556
11
7.1
14
65
22
58
33
2
8
55
1.42
38495--38562
26
2.6
26
86
9
102
33
1
10
54
1.43
38572--38636
23
2.8
24
88
9
100
38
0
24
36
1.56
38698--38742
21
2.1
22
87
4
65
35
11
35
17
1.86
45818--45901
42
2.0
42
92
0
141
35
8
21
34
1.84
46056--46139
33
2.5
33
90
3
125
13
29
40
16
1.86
49064--49135
29
2.4
29
81
2
81
38
26
11
23
1.88
50605--50639
11
3.2
11
83
0
52
77
17
5
0
0.96
51385--51429
21
2.1
22
88
12
67
40
6
11
42
1.67
51394--51435
21
2.0
21
86
9
59
38
9
11
40
1.75
65456--65498
11
3.9
11
90
0
68
46
6
4
41
1.51
65452--65498
22
2.1
22
96
0
85
46
6
4
42
1.48
66125--66174
22
2.3
22
100
0
100
32
18
8
42
1.79
70546--70579
2
17.0
2
100
0
68
50
0
0
50
1.00
94039--94071
2
16.5
2
93
0
57
51
0
48
0
1.00
106329--107643
325
4.0
318
76
12
1120
33
13
15
37
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
113092--113124
15
2.1
16
88
5
50
66
0
0
33
0.92
113171--113216
14
3.4
14
82
8
51
41
0
0
58
0.98
113182--113220
19
2.1
19
85
0
51
33
0
0
66
0.92
117136--117187
16
3.1
16
78
10
59
65
0
0
34
0.93
117493--117627
48
2.7
50
85
6
193
15
15
34
34
1.89
124851--124885
17
2.0
18
94
5
63
45
5
8
40
1.58
129533--129671
74
1.9
74
96
0
260
37
11
13
37
1.81
129966--130000
18
1.9
18
88
0
52
68
0
5
25
1.11
130195--130258
29
2.1
31
88
5
96
26
20
4
48
1.69
130213--130326
29
4.0
29
72
19
87
36
11
2
49
1.53
130245--130339
27
3.4
27
68
21
79
41
7
2
49
1.42
133490--135081
330
4.8
329
79
7
1622
33
14
14
38
1.86
134348--134372
2
12.5
2
100
0
50
48
0
0
52
1.00
133490--135031
674
2.3
671
86
4
2098
33
14
14
38
1.86
144239--144308
29
2.4
29
83
4
79
42
14
22
20
1.88
147099--147131
13
2.5
13
90
9
50
48
21
0
30
1.50
149394--149423
14
2.1
14
93
0
51
0
13
0
86
0.57
150099--150141
20
2.2
20
100
0
86
44
32
4
18
1.71
161760--161785
2
13.0
2
100
0
52
50
0
0
50
1.00
163560--163598
3
13.0
3
100
0
78
66
0
0
33
0.92
169108--169317
105
2.0
103
88
3
314
34
23
15
26
1.94
173237--173425
97
1.9
97
97
0
360
46
11
5
37
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
173609--173672
34
1.9
34
90
3
103
43
7
10
37
1.69
176718--176790
21
3.3
21
66
17
58
46
15
24
13
1.82
176707--176796
45
2.0
45
97
0
171
47
13
24
14
1.80
176719--176793
24
3.2
24
68
11
75
48
14
25
12
1.78
176791--176846
21
2.7
21
81
10
69
53
12
30
3
1.55
179037--179176
69
2.0
69
95
0
253
26
13
12
47
1.78
179119--179231
55
2.1
55
98
0
217
30
10
7
51
1.65
179490--179515
12
2.2
12
100
0
52
23
42
0
34
1.54
179769--179865
44
2.2
44
92
0
158
30
7
20
41
1.79
180148--180270
55
2.2
55
95
2
221
35
21
15
26
1.94
182511--182565
21
2.6
21
85
0
65
50
7
34
7
1.58

Tables:   1

The End!