Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010081.1 Corchorus capsularis cultivar CVL-1 contig10102, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5976
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27


Found at i:5628 original size:27 final size:27

Alignment explanation


    Indices: 5582--5658  Score: 100
    Period size: 27  Copynumber: 2.9  Consensus size: 27

       5572 CTAGGGTCGT

                   *                   
       5582 CCAAGGGTATTTTGGTCATTTTTGCAC
          1 CCAAGGGCATTTTGGTCATTTTTGCAC

               *                    *  
       5609 CCATGGGCATTTTGGTCATTTTTGTAC
          1 CCAAGGGCATTTTGGTCATTTTTGCAC

            *            *    *    
       5636 TCAAGGGCATTTTAGTCACTTTT
          1 CCAAGGGCATTTTGGTCATTTTT

       5659 AGGTTCACCT


Statistics
Matches: 43,  Mismatches: 7, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  27   43  1.00

ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43


Consensus pattern (27 bp):   
CCAAGGGCATTTTGGTCATTTTTGCAC
Done.