Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010084.1 Corchorus capsularis cultivar CVL-1 contig10105, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61106

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1603--1761
60
2.7
60
86
2
203
37
16
17
28
1.92
1662--1765
31
3.4
29
69
15
86
35
20
18
25
1.95
1827--1925
29
3.3
29
69
15
94
28
21
17
33
1.95
1794--1933
60
2.3
60
95
2
246
27
19
17
35
1.94
1796--1956
60
2.7
60
90
1
243
26
18
18
37
1.93
7494--7557
29
2.2
30
91
5
105
48
0
17
34
1.47
7512--7596
25
3.2
26
76
15
75
50
0
11
37
1.39
7677--7770
27
3.5
26
83
11
86
48
1
12
37
1.48
10203--10228
2
13.0
2
100
0
52
50
0
0
50
1.00
10299--10355
23
2.4
23
77
13
62
21
10
3
64
1.39
12638--12681
22
2.0
22
82
8
54
38
11
6
43
1.67
12696--12749
22
2.5
22
87
0
72
38
11
9
40
1.73
12676--12877
62
3.1
62
63
16
154
38
12
7
41
1.73
12622--12891
135
2.0
135
98
0
522
39
11
8
40
1.73
12773--12816
22
2.0
22
82
8
54
38
11
6
43
1.67
12831--13391
22
25.7
22
67
12
142
36
14
9
40
1.79
13143--13221
23
3.5
23
82
5
81
37
11
6
44
1.66
13379--13448
19
3.6
20
81
14
85
27
20
11
41
1.86
13510--13724
22
9.7
22
70
13
115
35
12
8
42
1.74
13509--13659
66
2.3
67
80
6
166
35
12
8
43
1.73
13622--13818
22
8.8
22
69
19
88
36
15
8
39
1.78
13782--13827
22
2.1
22
87
0
65
43
19
6
30
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13845--13900
22
2.5
22
77
11
60
33
16
12
37
1.86
13990--14121
22
6.0
22
84
5
151
36
18
11
34
1.86
13990--14121
44
3.0
44
84
5
169
36
18
11
34
1.86
13683--14681
518
1.9
519
98
0
1928
37
17
9
35
1.83
14300--14345
22
2.1
22
83
0
56
41
19
6
32
1.77
14363--14417
22
2.5
23
82
8
69
32
16
12
38
1.86
14454--14495
22
2.0
21
85
4
57
45
21
2
30
1.65
14509--14639
22
6.0
22
85
3
147
35
16
11
35
1.85
14915--14980
31
2.1
31
88
0
96
50
6
18
25
1.70
15036--15094
31
1.9
31
85
0
82
30
16
6
45
1.74
15585--15626
22
1.9
22
90
0
66
19
19
21
40
1.92
20082--20115
17
1.9
17
88
5
50
26
5
0
67
1.13
22161--22186
6
4.3
6
100
0
52
0
50
30
19
1.48
53831--54053
111
2.0
111
96
0
410
27
13
21
37
1.91
55450--55479
15
2.0
15
93
0
51
33
56
6
3
1.42
55517--55601
31
2.7
32
87
7
120
31
32
22
12
1.92
55545--55602
16
3.7
15
80
15
57
34
31
22
12
1.91
56447--56525
16
4.9
16
75
9
63
40
26
17
15
1.89
59941--59990
26
2.0
26
96
4
93
38
10
20
32
1.85

Tables:   1

The End!