Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010085.1 Corchorus capsularis cultivar CVL-1 contig10106, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28325

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54--103
26
2.0
26
96
4
93
38
10
20
32
1.85
8672--8702
16
1.9
16
100
0
62
41
12
19
25
1.87
11371--11472
16
6.4
16
75
4
98
31
37
21
9
1.86
11370--11474
48
2.2
48
77
13
117
32
36
21
9
1.86
11371--11474
32
3.2
33
81
5
124
31
36
22
9
1.86
12002--12083
42
2.0
42
92
0
137
37
14
6
41
1.71
12309--12377
16
4.4
16
77
14
72
36
37
17
8
1.81
12294--12379
31
2.8
32
85
5
113
34
39
17
8
1.79
12553--12656
16
6.6
16
70
10
88
35
32
18
13
1.90
13777--13820
20
2.3
19
84
11
54
70
0
2
27
0.99
13779--13829
19
2.8
18
78
21
61
72
0
1
25
0.95
18245--18274
2
15.0
2
100
0
60
0
0
50
50
1.00

Tables:   1

The End!