Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010086.1 Corchorus capsularis cultivar CVL-1 contig10107, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9093

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2635--2686
22
2.3
23
87
9
72
32
13
5
48
1.66
2626--2686
22
2.7
22
82
7
70
31
16
6
45
1.73
2680--2727
22
2.2
22
84
0
60
43
16
6
33
1.73
2699--2807
46
2.3
46
84
9
141
36
11
13
38
1.81
2792--2844
21
2.5
21
84
3
70
37
13
11
37
1.80
3212--3337
22
5.8
22
74
1
92
38
16
7
38
1.76
3254--3298
21
2.1
22
83
4
56
37
20
4
37
1.73
3355--3423
22
3.1
22
83
4
86
39
17
5
37
1.74
3364--3448
44
1.9
44
85
0
116
34
18
7
40
1.78
3366--3461
22
4.5
22
76
7
90
34
16
9
39
1.81
3544--4011
22
20.9
21
74
12
291
35
17
8
38
1.80
3658--3989
159
2.1
159
95
0
610
36
15
8
39
1.78
3549--3823
115
2.4
115
78
10
250
35
17
8
38
1.81
3910--4037
22
5.8
22
78
9
118
42
17
7
32
1.78
3889--4047
44
3.7
44
78
11
150
40
16
8
34
1.78
3910--4033
66
1.9
66
83
3
160
41
16
8
33
1.78

Tables:   1

The End!