Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010089.1 Corchorus capsularis cultivar CVL-1 contig10110, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60868

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
328--352
2
12.5
2
100
0
50
48
0
0
52
1.00
861--960
33
3.0
33
88
0
146
11
39
34
16
1.83
996--1058
19
3.2
19
75
16
65
36
0
1
61
1.05
1277--1314
20
2.0
20
84
5
51
36
7
31
23
1.84
3380--3458
31
2.5
31
80
11
90
32
11
18
36
1.87
4852--4877
13
2.0
13
100
0
52
30
46
15
7
1.74
5456--5500
21
2.1
21
95
0
81
37
6
6
48
1.56
5667--5747
38
2.1
38
90
0
135
35
18
13
32
1.90
9118--9168
2
25.5
2
82
11
61
47
1
1
49
1.24
10936--11009
32
2.3
32
83
4
96
21
10
31
36
1.88
19220--19252
7
5.0
7
89
10
52
0
9
0
90
0.44
19223--19252
13
2.3
13
100
0
60
0
6
0
93
0.35
20968--21062
46
2.1
46
92
4
156
34
42
4
18
1.70
21997--22053
20
2.8
20
89
2
87
33
24
10
31
1.89
23737--23823
42
2.1
42
97
0
165
49
18
2
29
1.60
24785--24826
22
1.9
22
85
0
57
42
21
16
19
1.89
31524--31643
60
2.0
60
96
0
222
41
15
13
30
1.85
32356--32387
2
16.0
2
93
0
55
46
3
0
50
1.17
33416--33462
24
2.0
24
82
0
58
68
0
6
25
1.13
34492--34636
78
1.9
78
98
0
281
62
5
11
20
1.47
35849--35923
31
2.4
31
86
0
114
46
5
18
29
1.71
47067--47511
169
2.7
165
84
3
577
29
15
15
39
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48083--48178
6
15.2
6
76
18
88
3
18
45
32
1.65
48087--48129
15
2.8
16
92
3
70
4
13
41
39
1.66
48118--48178
17
3.5
17
84
4
79
1
21
47
29
1.60
48104--48178
29
2.5
29
87
10
98
2
20
46
30
1.64
48118--48178
23
2.7
23
89
5
88
1
21
47
29
1.60
48916--48958
16
2.6
17
88
3
61
2
20
51
25
1.60
48916--49007
6
14.8
6
71
26
59
3
18
47
30
1.64
48947--48992
16
2.8
17
84
15
62
4
15
41
39
1.67
51950--51994
2
22.0
2
82
13
56
44
6
0
48
1.29
60377--60410
2
17.5
2
87
6
52
47
2
0
50
1.16
60429--60497
31
2.2
31
89
0
102
30
17
4
47
1.67

Tables:   1

The End!