Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010092.1 Corchorus capsularis cultivar CVL-1 contig10113, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8308
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Found at i:588 original size:29 final size:31
Alignment explanation
Indices: 544--615 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
534 CACGAAATGC
* *
544 TCAATTTAGTATTAAA-CT-TTTAAAGTT-GT
1 TCAATTTAGTACTAAACCTCATTAAA-TTGGT
573 TCAATTTAGTACTAAACCTCATTAAATTGGT
1 TCAATTTAGTACTAAACCTCATTAAATTGGT
*
604 TAAATTTAGTAC
1 TCAATTTAGTAC
616 CTTTTTCGAC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 15 0.41
30 4 0.11
31 18 0.49
ACGTcount: A:0.36, C:0.11, G:0.10, T:0.43
Consensus pattern (31 bp):
TCAATTTAGTACTAAACCTCATTAAATTGGT
Found at i:1689 original size:31 final size:30
Alignment explanation
Indices: 1653--1728 Score: 86
Period size: 31 Copynumber: 2.6 Consensus size: 30
1643 GATGTCTTAA
1653 ATTTGGAAAGTTTAGGGACAAAATGTCCTAG
1 ATTTGGAAAGTTTAGGGACAAAATGTCCT-G
* * *
1684 TTTTGG-AAGTTCAGGAGATAAAATGTCCTG
1 ATTTGGAAAGTTTAGG-GACAAAATGTCCTG
1714 ATTT--AAAGTTTAGGG
1 ATTTGGAAAGTTTAGGG
1729 GGAAAAACGT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
28 1 0.03
29 8 0.21
30 12 0.32
31 17 0.45
ACGTcount: A:0.33, C:0.08, G:0.26, T:0.33
Consensus pattern (30 bp):
ATTTGGAAAGTTTAGGGACAAAATGTCCTG
Found at i:3129 original size:22 final size:22
Alignment explanation
Indices: 3083--3136 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
3073 ATGATCCCAT
* *
3083 TATGAAATTTTGATAATATTCC
1 TATGAAATTTTAATAATATTAC
3105 TATGAAATTTTAATAATGA-TAC
1 TATGAAATTTTAATAAT-ATTAC
*
3127 TATGAGATTT
1 TATGAAATTT
3137 CGAGAACCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 27 0.96
23 1 0.04
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44
Consensus pattern (22 bp):
TATGAAATTTTAATAATATTAC
Found at i:3231 original size:23 final size:22
Alignment explanation
Indices: 3203--3255 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
3193 TATGAAATTG
*
3203 TGATAACCGACACTATTAGATAT
1 TGATAACCGACA-TATGAGATAT
** *
3226 TGATAACCTCCATATGATATAT
1 TGATAACCGACATATGAGATAT
3248 TGATAACC
1 TGATAACC
3256 ACGTTATGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 16 0.62
23 10 0.38
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (22 bp):
TGATAACCGACATATGAGATAT
Found at i:3320 original size:22 final size:22
Alignment explanation
Indices: 3282--3363 Score: 67
Period size: 22 Copynumber: 3.7 Consensus size: 22
3272 AAAACCTCAA
*
3282 TATG-AATTGTTAGTAATCACAC
1 TATGAAATTGTGA-TAATCACAC
* * * *
3304 TCTGTAATTTTGATAATCATAC
1 TATGAAATTGTGATAATCACAC
* * *
3326 TATGAAATTGTGATAACCTCGC
1 TATGAAATTGTGATAATCACAC
*
3348 TATGAAATTTTGATAA
1 TATGAAATTGTGATAA
3364 ATCTTCCTAT
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
22 41 0.87
23 6 0.13
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.39
Consensus pattern (22 bp):
TATGAAATTGTGATAATCACAC
Found at i:3378 original size:23 final size:23
Alignment explanation
Indices: 3309--3409 Score: 100
Period size: 23 Copynumber: 4.5 Consensus size: 23
3299 CACACTCTGT
* * *
3309 AATTTTGAT-AATCATACTATGA
1 AATTTTGATAAATCTTCCTATAA
* * *
3331 AATTGTGAT-AA-CCTCGCTATGA
1 AATTTTGATAAATCTTC-CTATAA
3353 AATTTTGATAAATCTTCCTATAA
1 AATTTTGATAAATCTTCCTATAA
* *
3376 AATTTTGATAAACCTCCCTATAA
1 AATTTTGATAAATCTTCCTATAA
3399 AATTTTGATAA
1 AATTTTGATAA
3410 CTTTCTTATG
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
21 2 0.03
22 24 0.35
23 39 0.57
24 3 0.04
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (23 bp):
AATTTTGATAAATCTTCCTATAA
Found at i:3402 original size:46 final size:45
Alignment explanation
Indices: 3309--3409 Score: 132
Period size: 46 Copynumber: 2.2 Consensus size: 45
3299 CACACTCTGT
* * *
3309 AATTTTGAT-AATCATACTATGAAATTGTGATAACCTCGCTATGA
1 AATTTTGATAAATCATACTATAAAATTGTGATAACCTCCCTATAA
* * *
3353 AATTTTGATAAATCTTCCTATAAAATTTTGATAAACCTCCCTATAA
1 AATTTTGATAAATCATACTATAAAATTGTGAT-AACCTCCCTATAA
3399 AATTTTGATAA
1 AATTTTGATAA
3410 CTTTCTTATG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
44 9 0.18
45 18 0.37
46 22 0.45
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (45 bp):
AATTTTGATAAATCATACTATAAAATTGTGATAACCTCCCTATAA
Found at i:3486 original size:22 final size:22
Alignment explanation
Indices: 3309--3594 Score: 132
Period size: 22 Copynumber: 13.3 Consensus size: 22
3299 CACACTCTGT
* * *
3309 AATTTTGATAATCATACTATGA
1 AATTTTGATAACCTTCCTATGA
*
3331 AATTGTGATAACC-TCGCTATGA
1 AATTTTGATAACCTTC-CTATGA
* *
3353 AATTTTGATAAATCTTCCTATAA
1 AATTTTGAT-AACCTTCCTATGA
* *
3376 AATTTTGATAAACCTCCCTATAA
1 AATTTTGAT-AACCTTCCTATGA
* *
3399 AATTTTGATAACTTTCTTATGA
1 AATTTTGATAACCTTCCTATGA
*
3421 AATCTTT-ATAA-----CTA-CA
1 AAT-TTTGATAACCTTCCTATGA
* *
3437 AATTTTAATAACCTCCCTATGA
1 AATTTTGATAACCTTCCTATGA
** **
3459 TTTTTTGATAACCTTATTATGA
1 AATTTTGATAACCTTCCTATGA
* *
3481 AATTTTGTTAATC-TCTCTATGA
1 AATTTTGATAACCTTC-CTATGA
* * * *
3503 AATTTTGATCTA-CATACTATAA
1 AATTTTGAT-AACCTTCCTATGA
*
3525 AATTTTGATAA-CTCTCTTATGA
1 AATTTTGATAACCT-TCCTATGA
* * **
3547 AATTTGGA-AAACTAAACTATGA
1 AATTTTGATAACCT-TCCTATGA
* *
3569 AATTTTGATATCC-T-CTCTGA
1 AATTTTGATAACCTTCCTATGA
3589 AATTTT
1 AATTTT
3595 AATTACTCCA
Statistics
Matches: 201, Mismatches: 46, Indels: 36
0.71 0.16 0.13
Matches are distributed among these distances:
15 3 0.01
16 8 0.04
17 2 0.01
20 11 0.05
21 9 0.04
22 121 0.60
23 45 0.22
24 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.08, T:0.42
Consensus pattern (22 bp):
AATTTTGATAACCTTCCTATGA
Found at i:3728 original size:22 final size:22
Alignment explanation
Indices: 3709--3869 Score: 157
Period size: 22 Copynumber: 7.4 Consensus size: 22
3699 ATTTTGAATA
3709 TTTGATAACCTCTTTATGAAAT
1 TTTGATAACCTCTTTATGAAAT
*
3731 TTTGATAACCTCTTTATAAAAT
1 TTTGATAACCTCTTTATGAAAT
*
3753 TTTGATAACCTCTTTATAAAAT
1 TTTGATAACCTCTTTATGAAAT
* * * *
3775 TTTGTTGACCCCTCTATGAAAT
1 TTTGATAACCTCTTTATGAAAT
* * *
3797 TCTGATAA--TCAATTATGTAAT
1 TTTGATAACCTC-TTTATGAAAT
*
3818 TTTGATAACCTCGCTT-TGAAAT
1 TTTGATAACCTC-TTTATGAAAT
** **
3840 TTTGATAACAACACTATGAAAT
1 TTTGATAACCTCTTTATGAAAT
3862 TTTGATAA
1 TTTGATAA
3870 TTTTCCTATA
Statistics
Matches: 114, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
20 1 0.01
21 15 0.13
22 94 0.82
23 4 0.04
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.42
Consensus pattern (22 bp):
TTTGATAACCTCTTTATGAAAT
Found at i:3728 original size:44 final size:45
Alignment explanation
Indices: 3678--3777 Score: 118
Period size: 44 Copynumber: 2.3 Consensus size: 45
3668 AGAAATACCA
* *
3678 TTATGAAATTTTTG-TAATCACATTT-T-GAATATTTGATAACCTCT
1 TTATGAAATTTTTGATAACCAC-TTTATAAAAT-TTTGATAACCTCT
*
3722 TTATGAAA-TTTTGATAACCTCTTTATAAAATTTTGATAACCTCT
1 TTATGAAATTTTTGATAACCACTTTATAAAATTTTGATAACCTCT
*
3766 TTATAAAATTTT
1 TTATGAAATTTT
3778 GTTGACCCCT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
43 8 0.17
44 34 0.71
45 6 0.12
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (45 bp):
TTATGAAATTTTTGATAACCACTTTATAAAATTTTGATAACCTCT
Found at i:4004 original size:22 final size:22
Alignment explanation
Indices: 3709--4114 Score: 93
Period size: 22 Copynumber: 18.4 Consensus size: 22
3699 ATTTTGAATA
*
3709 TTTGATAACC-TCTTTATGAAAT
1 TTTGATAACCTTC-ATATGAAAT
* *
3731 TTTGATAACC-TCTTTATAAAAT
1 TTTGATAACCTTC-ATATGAAAT
* *
3753 TTTGATAACC-TCTTTATAAAAT
1 TTTGATAACCTTC-ATATGAAAT
* * *
3775 TTTGTTGACCCCTC-TATGAAAT
1 TTTGAT-AACCTTCATATGAAAT
* *
3797 TCTGATAA---TCAATTATGTAAT
1 TTTGATAACCTTC-A-TATGAAAT
* *
3818 TTTGATAACC-TCGCTTTGAAAT
1 TTTGATAACCTTC-ATATGAAAT
**
3840 TTTGATAA-CAACACTATGAAAT
1 TTTGATAACCTTCA-TATGAAAT
** *
3862 TTTGATAATTTTCCTAT-AAAT
1 TTTGATAACCTTCATATGAAAT
*
3883 TTTGCTAATCCGATCTC-TATGAAAT
1 TTTGATAA-CC--T-TCATATGAAAT
* * *
3908 TTCGATAA--TTACTCTATGAGA-
1 TTTGATAACCTT-C-ATATGAAAT
*
3929 TTTGATAACCTTC-TATCAAAT
1 TTTGATAACCTTCATATGAAAT
* * * * *
3950 TTTGGTACACTTATGAAATTGAGACT
1 TTTGATA-ACCT-TCATA-TGA-AAT
3976 TTT-ATAACCTTCATATGAAAT
1 TTTGATAACCTTCATATGAAAT
*
3997 TTTGATAA-CTACACTAT-ATAAT
1 TTTGATAACCTTCA-TATGA-AAT
* **
4019 TTTGATAACCTCCCCATGAAAT
1 TTTGATAACCTTCATATGAAAT
* *
4041 ATT-AGTAACC-TCCTAATGAAAT
1 TTTGA-TAACCTTCAT-ATGAAAT
* *
4063 TTTGTTAACC-ACACTATGAAAT
1 TTTGATAACCTTCA-TATGAAAT
* *
4085 TCTT-TTAACCTTGC-TATGACAT
1 T-TTGATAACCTT-CATATGAAAT
4107 TTTGATAA
1 TTTGATAA
4115 TCTCTTTGAT
Statistics
Matches: 291, Mismatches: 54, Indels: 78
0.69 0.13 0.18
Matches are distributed among these distances:
18 2 0.01
19 1 0.00
20 7 0.02
21 55 0.19
22 175 0.60
23 19 0.07
24 11 0.04
25 16 0.05
26 5 0.02
ACGTcount: A:0.34, C:0.16, G:0.09, T:0.41
Consensus pattern (22 bp):
TTTGATAACCTTCATATGAAAT
Found at i:4175 original size:22 final size:22
Alignment explanation
Indices: 4150--4355 Score: 146
Period size: 22 Copynumber: 9.3 Consensus size: 22
4140 TTGTGATAAT
*
4150 TAACCACCCTATGAAATTTTAA
1 TAACCACCCTATGAAATTTTGA
* * * * *
4172 TAACCAACATAAGAATTTTTAA
1 TAACCACCCTATGAAATTTTGA
* *
4194 TAACCTGATCCTATGAAATTTTGG
1 TAACC--ACCCTATGAAATTTTGA
* *
4218 T-ACCACACTATGAAATTTTGG
1 TAACCACCCTATGAAATTTTGA
*
4239 TAACCACACTATGAAATTTTGA
1 TAACCACCCTATGAAATTTTGA
*** * *
4261 TAACTTTCATATGAAATTTTGG
1 TAACCACCCTATGAAATTTTGA
*
4283 TAACCACACTATGAAATTTTGA
1 TAACCACCCTATGAAATTTTGA
* * *
4305 TAACC-TCCTGATGAAATTATAA
1 TAACCACCCT-ATGAAATTTTGA
* * * *
4327 TAACTATCTTATGAAATTTTAA
1 TAACCACCCTATGAAATTTTGA
*
4349 AAACCAC
1 TAACCAC
4356 ATAGAGACAA
Statistics
Matches: 144, Mismatches: 35, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
21 18 0.12
22 108 0.75
23 6 0.04
24 12 0.08
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.34
Consensus pattern (22 bp):
TAACCACCCTATGAAATTTTGA
Found at i:4228 original size:21 final size:22
Alignment explanation
Indices: 4204--4322 Score: 154
Period size: 22 Copynumber: 5.5 Consensus size: 22
4194 TAACCTGATC
4204 CTATGAAATTTTGGT-ACCACA
1 CTATGAAATTTTGGTAACCACA
4225 CTATGAAATTTTGGTAACCACA
1 CTATGAAATTTTGGTAACCACA
* **
4247 CTATGAAATTTTGATAACTTTCA
1 CTATGAAATTTTGGTAAC-CACA
4270 -TATGAAATTTTGGTAACCACA
1 CTATGAAATTTTGGTAACCACA
* *
4291 CTATGAAATTTTGATAACCTC-
1 CTATGAAATTTTGGTAACCACA
4312 CTGATGAAATT
1 CT-ATGAAATT
4323 ATAATAACTA
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
21 19 0.22
22 65 0.76
23 2 0.02
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36
Consensus pattern (22 bp):
CTATGAAATTTTGGTAACCACA
Found at i:4303 original size:66 final size:66
Alignment explanation
Indices: 4150--4346 Score: 238
Period size: 66 Copynumber: 3.0 Consensus size: 66
4140 TTGTGATAAT
* * * * *
4150 TAACCACCCTATGAAATTTTAATAACCA-ACATAAGAATTTTTAATAACCTGATCCTATGAAATT
1 TAACCACACTATGAAATTTTGATAACCACAC-TATGAAATTTTAATAA-CT-ATCATATGAAATT
4214 TTGG
63 TTGG
* * *
4218 T-ACCACACTATGAAATTTTGGTAACCACACTATGAAATTTTGATAACTTTCATATGAAATTTTG
1 TAACCACACTATGAAATTTTGATAACCACACTATGAAATTTTAATAACTATCATATGAAATTTTG
4282 G
66 G
* * *
4283 TAACCACACTATGAAATTTTGATAACCTC-CTGATGAAATTATAATAACTATCTTATGAAATTTT
1 TAACCACACTATGAAATTTTGATAACCACACT-ATGAAATTTTAATAACTATCATATGAAATTTT
4347 AAAAACCACA
Statistics
Matches: 112, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
65 18 0.16
66 55 0.49
67 36 0.32
68 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (66 bp):
TAACCACACTATGAAATTTTGATAACCACACTATGAAATTTTAATAACTATCATATGAAATTTTG
G
Found at i:4551 original size:19 final size:20
Alignment explanation
Indices: 4520--4557 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
4510 TATTGACATT
4520 TAAAAATTGAAATT-AAAAG
1 TAAAAATTGAAATTCAAAAG
4539 TAAAATATT-AAATTCAAAA
1 TAAAA-ATTGAAATTCAAAA
4558 AAATAATAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (20 bp):
TAAAAATTGAAATTCAAAAG
Found at i:4935 original size:31 final size:31
Alignment explanation
Indices: 4870--4928 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
4860 CAATTAATTA
* *
4870 GAAATATATTTTTTAAAAAAGGGTACAACTG
1 GAAATATATTTTTAAAAAAAGGATACAACTG
4901 GAAATATA-TTTTAAAAATAAGGATACAA
1 GAAATATATTTTTAAAAA-AAGGATACAA
4929 TCGGAAACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 8 0.32
31 17 0.68
ACGTcount: A:0.51, C:0.05, G:0.14, T:0.31
Consensus pattern (31 bp):
GAAATATATTTTTAAAAAAAGGATACAACTG
Found at i:5511 original size:105 final size:106
Alignment explanation
Indices: 5330--5619 Score: 451
Period size: 107 Copynumber: 2.8 Consensus size: 106
5320 AATTTTTTTA
* ** *
5330 ACCCTTAAAATAAAATTTTAATTTTAATTT-GGGCTAAACTTAGTG-AATTAGTTATATATTTTA
1 ACCCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTAGTTTTATATTTTA
*
5393 TTTCTAAAACCCTATAACAAT-ATTATTAATTATGGAATTT
66 TTTCTAAAACCCTATAACAATAATTATTAATTATGAAATTT
*
5433 ACCCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTAGTTTTGTATTTTA
1 ACCCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTAGTTTTATATTTTA
*
5498 TTTCTAAAACCCTATAACAATAAATTATTAATTTTGAAATTT
66 TTTCTAAAACCCTATAACAAT-AATTATTAATTATGAAATTT
* * *
5540 ACCTTTAAAATAAAAATACAATTTTAATTTGAGGCTAAACTTAGTGAAATTAGTTTTATATTTTA
1 ACCCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTAGTTTTATATTTTA
*
5605 TTTCTAAAACTCTAT
66 TTTCTAAAACCCTAT
5620 GATAAAAAGT
Statistics
Matches: 171, Mismatches: 12, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
103 27 0.16
104 15 0.09
105 37 0.22
107 92 0.54
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (106 bp):
ACCCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTAGTTTTATATTTTA
TTTCTAAAACCCTATAACAATAATTATTAATTATGAAATTT
Found at i:5662 original size:107 final size:107
Alignment explanation
Indices: 5349--5660 Score: 329
Period size: 107 Copynumber: 3.0 Consensus size: 107
5339 ATAAAATTTT
*
5349 AATTTTAATTTG-GGCTAAACTTAGTG-AATTAGTTATATATTTTATTTCTAAAACCCTATAACA
1 AATTTTAATTTGAGGCTAAACTTAGTGAAATTAGTTTTATATTTTATTTCTAAAACCCTATAACA
* * * * * * *
5412 AT--ATTATTAATTA-TGGAATTTACCCT-TAAAATAAAAATAA
66 ATAAAGTACTAA-TACTGAAACTTA-CATAAAAAATAAAAATAC
* *
5452 AATTTTAATTTGGGGCTAAACTTAGTGAAATTAGTTTTGTATTTTATTTCTAAAACCCTATAACA
1 AATTTTAATTTGAGGCTAAACTTAGTGAAATTAGTTTTATATTTTATTTCTAAAACCCTATAACA
* * ** * * **
5517 ATAAATTATTAATTTTGAAATTTACCTTTAAAATAAAAATAC
66 ATAAAGTACTAATACTGAAACTTACATAAAAAATAAAAATAC
* * *
5559 AATTTTAATTTGAGGCTAAACTTAGTGAAATTAGTTTTATATTTTATTTCTAAAACTCTATGATA
1 AATTTTAATTTGAGGCTAAACTTAGTGAAATTAGTTTTATATTTTATTTCTAAAACCCTATAACA
5624 A-AAAGTACT-ATGACT-AAACTTA-ATAAAAAAATAAAAA
66 ATAAAGTACTAAT-ACTGAAACTTACAT-AAAAAATAAAAA
5661 AAAACAAAAG
Statistics
Matches: 183, Mismatches: 18, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
103 12 0.07
104 15 0.08
105 55 0.30
106 11 0.06
107 90 0.49
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (107 bp):
AATTTTAATTTGAGGCTAAACTTAGTGAAATTAGTTTTATATTTTATTTCTAAAACCCTATAACA
ATAAAGTACTAATACTGAAACTTACATAAAAAATAAAAATAC
Done.