Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010096.1 Corchorus capsularis cultivar CVL-1 contig10117, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97510

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6949--7305
139
2.6
138
82
4
396
40
13
13
31
1.84
13107--13144
20
1.9
20
88
0
58
36
2
57
2
1.26
29459--29486
3
9.3
3
100
0
56
67
0
32
0
0.91
41235--41273
19
2.0
19
85
5
51
28
15
12
43
1.83
42356--42629
109
2.5
109
90
5
419
37
11
2
48
1.53
42356--42629
108
2.5
110
89
5
421
37
11
2
48
1.53
47891--47941
14
3.3
15
76
23
52
9
17
17
54
1.69
49621--49699
37
2.1
38
88
4
117
20
10
6
63
1.47
50866--50892
1
27.0
1
100
0
54
0
0
0
100
0.00
53928--53959
1
32.0
1
100
0
64
0
0
0
100
0.00
54706--54739
2
17.0
2
100
0
68
50
0
0
50
1.00
59272--59343
29
2.5
29
93
0
117
38
30
9
20
1.85
61863--61905
16
2.8
15
82
3
50
69
2
2
25
1.12
62292--62331
21
1.9
21
94
0
71
27
5
22
45
1.73
62380--62452
37
2.0
37
97
0
137
30
19
20
30
1.97
65990--66023
17
2.0
17
88
0
50
58
0
29
11
1.33
67624--67713
45
2.0
45
93
4
155
34
20
21
24
1.96
71409--71722
168
1.9
166
81
6
388
31
22
14
31
1.94
75265--75291
10
2.7
10
100
0
54
92
0
0
7
0.38
75429--75489
2
32.0
2
78
15
67
47
1
1
49
1.21
75521--75551
16
1.9
16
100
0
62
45
6
12
35
1.68
79329--79367
20
2.0
19
85
5
51
61
7
17
12
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82141--82186
1
46.0
1
82
0
56
91
0
8
0
0.43
82141--82186
10
4.7
10
91
2
76
91
0
8
0
0.43
85446--85503
16
3.7
15
80
11
55
51
31
8
8
1.63
86482--86562
12
6.7
12
85
1
99
39
1
9
49
1.44
86482--86574
4
23.0
4
84
2
87
40
1
10
47
1.45
91908--91937
12
2.5
12
94
0
51
0
0
10
90
0.47
94492--94578
41
2.1
41
100
0
174
35
13
20
29
1.92
97436--97510
31
2.5
31
82
6
91
38
20
6
34
1.78

Tables:   1

The End!