Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010097.1 Corchorus capsularis cultivar CVL-1 contig10118, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40475

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
625--745
31
3.9
30
81
4
116
38
20
15
25
1.92
624--714
30
2.9
30
81
4
110
39
20
14
25
1.90
3808--3869
29
2.1
30
82
8
74
43
9
20
25
1.83
14013--14111
33
3.0
33
90
0
162
34
26
11
28
1.90
15039--15231
98
2.0
98
97
0
368
25
22
22
29
1.99
15619--15654
18
2.0
18
100
0
72
27
33
11
27
1.91
15793--15874
39
2.0
41
90
6
132
42
18
9
29
1.82
15721--15945
114
2.0
110
93
3
378
39
18
9
32
1.84
15832--16043
73
2.9
71
89
5
325
37
19
9
33
1.84
18823--18994
86
2.0
86
91
0
281
36
8
14
40
1.76
24301--24328
13
2.2
13
100
0
56
71
7
0
21
1.09
24722--24921
98
2.0
98
98
0
382
43
10
11
35
1.74
25393--25419
14
1.9
14
100
0
54
11
14
7
66
1.43
35891--35920
13
2.3
13
94
0
51
13
46
6
33
1.69
36021--36101
41
2.0
41
92
4
137
27
13
18
40
1.88
36311--36431
63
1.9
62
93
1
206
19
17
9
54
1.69
39082--39114
6
5.8
6
92
7
52
0
15
0
84
0.61
39083--39114
16
1.9
17
93
6
57
0
15
0
84
0.63
39803--39957
56
2.8
56
89
1
240
52
18
10
18
1.74

Tables:   1

The End!