Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001010.1 Corchorus capsularis cultivar CVL-1 contig01010, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 830

Length: 1384
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32


Found at i:689 original size:16 final size:16

Alignment explanation


    Indices: 668--700  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        658 TCGCAAATAC

                            
        668 TCAATACATGGGGATT
          1 TCAATACATGGGGATT

                            
        684 TCAATACATGGGGATT
          1 TCAATACATGGGGATT

             
        700 T
          1 T

        701 AATCCGTAAG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.30, C:0.12, G:0.24, T:0.33


Consensus pattern (16 bp):   
TCAATACATGGGGATT
Done.