Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010100.1 Corchorus capsularis cultivar CVL-1 contig10121, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30186

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1198--1612
204
2.0
207
91
1
674
33
14
20
32
1.92
3751--3889
55
2.5
55
78
11
142
43
23
10
22
1.85
3862--3910
21
2.3
21
86
10
73
36
24
16
22
1.94
3803--3965
76
2.1
76
78
10
172
41
20
13
24
1.89
3991--4265
95
2.9
94
89
4
414
46
6
16
30
1.72
5489--5776
144
2.0
144
100
0
576
42
15
18
23
1.89
5715--6109
203
1.9
204
90
2
634
33
13
18
33
1.91
9837--9888
24
2.2
24
92
0
86
3
23
30
42
1.72
10381--10499
63
1.9
63
91
3
195
42
14
31
10
1.80
15903--16452
77
7.1
77
87
6
745
38
12
23
25
1.89
15904--16452
153
3.5
153
88
4
755
38
12
23
25
1.90
16254--16904
89
7.8
82
83
10
470
36
14
21
27
1.93
16411--16906
170
2.9
170
85
5
624
35
15
19
28
1.93
16628--16906
89
3.1
89
94
3
490
31
17
20
30
1.95
20456--20507
24
2.2
24
96
0
95
3
25
30
40
1.73
26219--26256
14
2.9
13
85
11
51
21
0
13
65
1.26

Tables:   1

The End!