Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010101.1 Corchorus capsularis cultivar CVL-1 contig10122, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73818

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1366--1419
19
2.9
19
84
13
60
3
24
0
72
1.01
3459--3488
15
2.0
15
93
0
51
73
3
3
20
1.12
14388--14416
14
2.1
14
100
0
58
27
34
17
20
1.95
20409--20442
9
3.7
9
92
7
59
26
0
0
73
0.83
20408--20443
10
3.7
10
92
7
65
25
0
0
75
0.81
20499--20566
26
2.6
26
90
4
102
35
1
8
54
1.41
20508--20556
11
4.1
11
76
19
53
34
2
8
55
1.41
20499--20566
15
5.1
14
70
26
58
35
1
8
54
1.41
20576--20634
25
2.4
25
91
5
95
40
0
23
35
1.55
20705--20746
20
2.1
20
90
0
66
38
9
33
19
1.84
24094--24232
64
2.2
64
84
0
170
30
13
26
29
1.94
24678--24941
107
2.5
106
89
1
404
39
7
9
43
1.67
26968--27036
26
2.4
27
72
13
68
33
15
13
37
1.86
35728--36095
132
2.8
131
87
2
490
26
16
22
33
1.96
36251--36284
3
11.3
3
100
0
68
35
0
32
32
1.58
37725--37760
16
2.2
16
90
0
54
52
2
0
44
1.15
39445--39492
24
2.0
25
83
4
62
22
6
8
62
1.46
40047--40242
95
2.1
95
95
0
347
29
13
7
49
1.70
41364--41501
68
2.0
68
86
5
190
37
26
5
29
1.80
42154--42188
16
2.2
16
94
0
61
11
22
17
48
1.79
45529--45616
45
1.9
46
84
6
117
32
9
29
28
1.88
45813--45874
22
3.0
20
73
4
61
46
6
17
29
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45952--46024
22
3.4
22
83
5
78
42
9
8
39
1.67
45908--46006
22
4.5
22
73
5
76
35
10
11
43
1.74
50006--50030
13
1.9
13
100
0
50
32
8
20
40
1.81
52492--52678
93
2.0
93
98
0
365
32
8
22
36
1.84
54950--54979
2
15.0
2
92
0
51
50
0
3
46
1.18
55379--55413
17
2.1
17
89
10
54
57
2
5
34
1.37
56991--57068
39
2.0
39
94
0
138
25
20
15
38
1.92
58043--58073
16
1.9
16
93
0
53
9
19
6
64
1.45
66040--66083
19
2.3
19
84
7
54
11
50
2
36
1.51
68751--68788
11
3.5
11
89
10
51
39
0
2
57
1.12
69583--69622
19
2.1
19
100
0
80
60
0
35
5
1.19
71196--71230
17
2.1
17
100
0
70
25
22
28
22
1.99

Tables:   1

The End!