genome.fa.s10106.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010106.1 Corchorus capsularis cultivar CVL-1 contig10127, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77501

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
923--988	31	2.1	32	88	5	100	27	16	4	51	1.64
953--1250	149	2.0	148	96	0	551	33	14	3	48	1.61
2720--2757	19	2.0	20	85	15	53	28	5	2	63	1.30
2922--3082	22	7.2	22	76	5	108	32	9	18	39	1.83
3114--3156	22	2.0	22	86	9	61	41	9	18	30	1.82
3147--3252	22	4.8	22	70	11	65	33	8	19	37	1.82
3280--3399	22	5.5	22	78	12	113	41	10	13	35	1.78
3416--3489	22	3.4	22	82	0	94	43	9	16	31	1.79
3601--3640	19	2.1	19	95	0	71	37	10	27	25	1.88
3631--3925	22	13.5	22	72	14	132	39	8	14	37	1.77
3626--3772	68	2.2	66	81	10	165	40	8	14	35	1.78
3824--3927	23	4.6	23	83	3	113	37	7	13	41	1.73
3824--3938	22	5.1	23	83	7	121	36	6	15	40	1.74
4050--4197	22	6.8	22	69	10	99	40	10	14	34	1.80
5085--5110	2	13.0	2	100	0	52	50	0	0	50	1.00
8533--8557	6	4.2	6	100	0	50	52	0	0	48	1.00
12806--12857	27	2.0	26	88	3	77	40	0	1	57	1.10
15218--15252	18	1.9	18	88	0	52	34	20	5	40	1.76
22673--22700	2	14.0	2	100	0	56	50	0	0	50	1.00
23406--23489	41	2.0	42	97	2	161	41	4	7	46	1.52
23410--23497	42	2.1	41	91	2	140	43	4	7	44	1.54
23553--23587	16	2.2	16	89	0	52	57	5	25	11	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23804--23841	11	3.5	11	89	10	51	39	0	2	57	1.12
32270--32335	30	2.2	30	100	0	132	37	12	18	31	1.87
32441--32667	113	2.0	112	92	5	377	35	11	14	38	1.82
32781--32811	2	15.5	2	100	0	62	51	0	0	48	1.00
35697--35731	3	11.7	3	100	0	70	65	0	0	34	0.93
36036--36165	68	1.9	68	88	0	197	45	15	11	27	1.81
61251--61326	29	2.5	30	78	4	82	26	25	10	38	1.88
67659--67691	11	3.0	11	91	8	50	42	0	3	54	1.15
68276--68379	52	2.0	52	100	0	208	26	9	21	42	1.83
69806--69845	21	2.0	21	85	5	55	50	0	15	35	1.44
71254--71351	31	3.1	31	91	5	153	30	19	4	45	1.69
71664--71701	19	2.0	20	85	15	53	28	5	2	63	1.30
71870--72024	22	6.8	22	75	11	91	32	11	18	37	1.87
72075--72181	56	1.9	56	84	3	144	35	9	16	38	1.81
72131--72479	22	15.5	22	68	12	111	40	9	15	35	1.79
72591--73161	22	26.0	22	65	13	115	39	9	15	35	1.81
72765--73026	45	5.9	45	71	11	159	36	9	15	38	1.81
72591--73043	22	20.7	22	68	14	186	38	9	15	36	1.81
73334--73408	17	4.2	17	74	17	55	56	1	0	42	1.08
73352--73403	5	10.2	5	76	12	52	53	0	0	46	1.00
73281--73405	55	2.2	55	84	7	153	52	1	0	44	1.16
73857--73899	21	2.0	21	100	0	86	25	18	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75089--75156	31	2.3	31	84	5	86	41	16	17	25	1.89

Tables:   1

The End!