Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001011.1 Corchorus capsularis cultivar CVL-1 contig01011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 985

Length: 1642
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28


Found at i:1028 original size:24 final size:26

Alignment explanation


    Indices: 987--1038  Score: 72
    Period size: 25  Copynumber: 2.1  Consensus size: 26

        977 ATAAGTGAAC

                                      
        987 AATAAAAATAAACAAACAAGA-AAAT
          1 AATAAAAATAAACAAACAAGATAAAT

                   *   *              
       1012 AATAAAATTAAGC-AACAAGATAAAT
          1 AATAAAAATAAACAAACAAGATAAAT

              
       1037 AA
          1 AA

       1039 ATACTCCAAT


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  24    7  0.29
  25   17  0.71

ACGTcount: A:0.71, C:0.08, G:0.06, T:0.15


Consensus pattern (26 bp):   
AATAAAAATAAACAAACAAGATAAAT
Done.