Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01010112.1 Corchorus capsularis cultivar CVL-1 contig10133, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16593
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Found at i:83 original size:48 final size:48
Alignment explanation
Indices: 1--581 Score: 581
Period size: 48 Copynumber: 12.2 Consensus size: 48
* * *
1 GTCTACAAGTCCCCACCTCCACCATC-CCCATCACCACCTCCTCCCTAT
1 GTCTACAAGTCCCCACCACCACCATCTCCC-TCACCTCCTCCTCCTTAT
* * *
49 GTTTACAAGTCCCCACCACAACCATCTCCCTCACCTCCTCCCCCTTAT
1 GTCTACAAGTCCCCACCACCACCATCTCCCTCACCTCCTCCTCCTTAT
* *
97 GTCTACAAGTCCCCACCTCCACCATCTCCCTCACCTCCTCCCCCTTAT
1 GTCTACAAGTCCCCACCACCACCATCTCCCTCACCTCCTCCTCCTTAT
* *
145 GTCTACAAGTCCCCACCTCCACCATC-CCCATCACCACCTCCTCCTTAT
1 GTCTACAAGTCCCCACCACCACCATCTCCC-TCACCTCCTCCTCCTTAT
* * * * * *
193 GTCTACAAGTCCCCTCCACCACCATCTCCCTTAACTCCACCTCCATAC
1 GTCTACAAGTCCCCACCACCACCATCTCCCTCACCTCCTCCTCCTTAT
* * * * *
241 GTGTATAAG-CCTCCACCACCTCCATC-CCCATCACCTCCCCCACCTTAT
1 GTCTACAAGTCC-CCACCACCACCATCTCCC-TCACCTCCTCCTCCTTAT
* * *
289 GTCTACAAGTCTCCACCCCCTCCATCTCCCTCACCTCCTCCTCCTTAT
1 GTCTACAAGTCCCCACCACCACCATCTCCCTCACCTCCTCCTCCTTAT
* * * * * * * * *
337 TTGTACAAGTCTCCTCCACCACCATCTCCTTCGCCTCCACCTCCATAC
1 GTCTACAAGTCCCCACCACCACCATCTCCCTCACCTCCTCCTCCTTAT
* * * * *
385 GTGTACAAGTCTCCACCACCACCATC-CCCATCACCTCCACCACCTTAC
1 GTCTACAAGTCCCCACCACCACCATCTCCC-TCACCTCCTCCTCCTTAT
* * * * *
433 ATTTACAAGTCTCCACCTCCACCATCTCCCTCACCTCCTCCACCTTAT
1 GTCTACAAGTCCCCACCACCACCATCTCCCTCACCTCCTCCTCCTTAT
* *
481 GTCTACAAGTCCCCACCTCCACCTTCTCCCTCACCTCCTCCTCCTTAT
1 GTCTACAAGTCCCCACCACCACCATCTCCCTCACCTCCTCCTCCTTAT
* * * * *
529 ATTTACAAGT------CACCACCATCTCCATCGCCTCCTCCACCTTAT
1 GTCTACAAGTCCCCACCACCACCATCTCCCTCACCTCCTCCTCCTTAT
*
571 GTTTACAAGTC
1 GTCTACAAGTC
582 TCCTCCCCCA
Statistics
Matches: 454, Mismatches: 69, Indels: 25
0.83 0.13 0.05
Matches are distributed among these distances:
42 36 0.08
47 10 0.02
48 395 0.87
49 13 0.03
ACGTcount: A:0.20, C:0.50, G:0.05, T:0.25
Consensus pattern (48 bp):
GTCTACAAGTCCCCACCACCACCATCTCCCTCACCTCCTCCTCCTTAT
Found at i:536 original size:144 final size:144
Alignment explanation
Indices: 1--581 Score: 658
Period size: 144 Copynumber: 4.1 Consensus size: 144
* *
1 GTCTACAAGTCCCCACCTCCACCATCCCCATCACCACCTCCTCCCTATGTTTACAAGTCCCCACC
1 GTCTACAAGTCCCCACCTCCACCATCCCCATCACCACCTCCTCCTTATGTCTACAAGTCCCCACC
* * * * * * * *
66 ACAACCATCTCCCTCACCTCCTCCCCCTTATGTCTACAAGTCCCCACCTCCACCATCTCCC-TCA
66 ACCACCATCTCCCTCACCTCCACCTCCATACGTGTACAAGTCTCCACCACCACCATC-CCCATCA
* *
130 CCTCCTCCCCCTTAT
130 CCTCCACCACCTTAT
*
145 GTCTACAAGTCCCCACCTCCACCATCCCCATCACCACCTCCTCCTTATGTCTACAAGTCCCCTCC
1 GTCTACAAGTCCCCACCTCCACCATCCCCATCACCACCTCCTCCTTATGTCTACAAGTCCCCACC
* * * * *
210 ACCACCATCTCCCTTAACTCCACCTCCATACGTGTATAAGCCTCCACCACCTCCATCCCCATCAC
66 ACCACCATCTCCCTCACCTCCACCTCCATACGTGTACAAGTCTCCACCACCACCATCCCCATCAC
*
275 CTCCCCCACCTTAT
131 CTCCACCACCTTAT
* * * * * * * *
289 GTCTACAAGTCTCCACCCCCTCCATCTCCC-TCACCTCCTCCTCCTTATTTGTACAAGTCTCCTC
1 GTCTACAAGTCCCCACCTCCACCATC-CCCATCACCACCTCCTCCTTATGTCTACAAGTCCCCAC
* *
353 CACCACCATCTCCTTCGCCTCCACCTCCATACGTGTACAAGTCTCCACCACCACCATCCCCATCA
65 CACCACCATCTCCCTCACCTCCACCTCCATACGTGTACAAGTCTCCACCACCACCATCCCCATCA
*
418 CCTCCACCACCTTAC
130 CCTCCACCACCTTAT
* * * * *
433 ATTTACAAGTCTCCACCTCCACCATCTCCC-TCACCTCCTCCACCTTATGTCTACAAGTCCCCAC
1 GTCTACAAGTCCCCACCTCCACCATC-CCCATCACCACCTCCTCCTTATGTCTACAAGTCCCCAC
* * * * ** * * *
497 CTCCACCTTCTCCCTCACCTCCTCCTCCTTATATTTACAAG--T----CACCACCATCTCCATCG
65 CACCACCATCTCCCTCACCTCCACCTCCATACGTGTACAAGTCTCCACCACCACCATCCCCATCA
*
556 CCTCCTCCACCTTAT
130 CCTCCACCACCTTAT
*
571 GTTTACAAGTC
1 GTCTACAAGTC
582 TCCTCCCCCA
Statistics
Matches: 378, Mismatches: 57, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
138 38 0.10
142 1 0.00
143 3 0.01
144 333 0.88
145 3 0.01
ACGTcount: A:0.20, C:0.50, G:0.05, T:0.25
Consensus pattern (144 bp):
GTCTACAAGTCCCCACCTCCACCATCCCCATCACCACCTCCTCCTTATGTCTACAAGTCCCCACC
ACCACCATCTCCCTCACCTCCACCTCCATACGTGTACAAGTCTCCACCACCACCATCCCCATCAC
CTCCACCACCTTAT
Found at i:1987 original size:292 final size:284
Alignment explanation
Indices: 1099--1997 Score: 1194
Period size: 288 Copynumber: 3.1 Consensus size: 284
1089 ACATTCTCGA
* * * *
1099 GGTTAAATCGAGTAAAATAACAATTGTAAAAGGACCAAGTAACATAAAACAGAATAGTCTGAGGA
1 GGTTAAATCGAGTAAAATAAAAATTGTAAAAGGACTAAGTAGCAT-AAACAGAAAAGTCTGAGGA
* * * * *
1164 CTATTTGATAAATAACTCATTCTCAAACTTTTAAATTACTTATATACCCACCTTTAAAGGACCAA
65 CTATTTGATAAATAACCCATTCTCAAACTTTAAAATTACTAATATGCCCACCTTTAAATGA-CAA
* * *** *
1229 AAAGCTAAAATTATTTTATTCCAAATAAATGTGGTGTATTAAATGATGGTTTTCCAGTCGTATCA
129 AAAAC-AAAATTATTTTATTCCAAATAAATGTGGTGTATTTAATGATGGTTTTTTGGTCATATCA
* * * * * * *
1294 CTTTGAACTTTAAATATAATAAGGTTAGATGTACGAGGGATTAAATTGCATAAAATAAAAATGTC
193 CTTTGAACTTTTAATAT-ATAAGGTTAGATGTATGAGGGATTAAATCGTATAGAATAAAAGTGTT
*
1359 TGAGGTATTTTCTATAAATAAAGTTGAAG
257 TGAGGTATTTTCTATAAA-AAAGTTGAGG
* *
1388 GGTTAAATCGAGTAAAATAAAAATTGTAAAAGGACTAAGTAGCATAAAGCAGAAATGTCCGAGGA
1 GGTTAAATCGAGTAAAATAAAAATTGTAAAAGGACTAAGTAGCATAAA-CAGAAAAGTCTGAGGA
* *
1453 CTATTTGACAAATAACCCATTCTCAAACTTGAAAATTACTAATATGCCCACCTTTAAATGACAAA
65 CTATTTGATAAATAACCCATTCTCAAACTTTAAAATTACTAATATGCCCACCTTTAAATGAC---
* * * * *
1518 AAAAAAACCAAAATTGTTTTATTCCAAATAAATGTGATGTATATAATGATGATTTTTTGGTCATT
127 -AAAAAA-CAAAATTATTTTATTCCAAATAAATGTGGTGTATTTAATGATGGTTTTTTGGTCATA
1583 TCACTTTGAAC-TTT-A-ATATAAGGTTAGATGTATGAGGGATTAAATCGTATAGAATAAAAGT-
190 TCACTTTGAACTTTTAATATATAAGGTTAGATGTATGAGGGATTAAATCGTATAGAATAAAAGTG
1644 TTCTGAGGTATTTTCTATAAAAAGAGTTGAGG
255 TT-TGAGGTATTTTCTATAAAAA-AGTTGAGG
** * *
1676 GGTTAAATCGAGTAAAATAAAAATCATAAAAGGACTAAGTAGCATAATACAAAAAAGTCTAAGGA
1 GGTTAAATCGAGTAAAATAAAAATTGTAAAAGGACTAAGTAGCATAA-ACAGAAAAGTCTGAGGA
* * * *
1741 CTATTTGATATATAACCCATTCTCAAACTTTAAAATTAATGATATGTCCACCTTTAAATGAGCAA
65 CTATTTGATAAATAACCCATTCTCAAACTTTAAAATTACTAATATGCCCACCTTTAAATGA-CAA
*
1806 AAAACAAAATTATTTTAGTACTCCAATTAAATGTGGTGTATTTAATGATGGTTTTTTGGTCATAT
129 AAAACAAAATTATTTTA-T--TCCAAATAAATGTGGTGTATTTAATGATGGTTTTTTGGTCATAT
*
1871 CACTTTAAACTAATTTAATATATAAGGTTAGATGTATGAGGGATTAAATCGTATAGAATAAAAGT
191 CACTTTGAACT--TTTAATATATAAGGTTAGATGTATGAGGGATTAAATCGTATAGAATAAAAGT
*
1936 GTTTAAGGTATTTTCTATTAAAAAAGTTGAGG
254 GTTTGAGGTATTTTCTA-TAAAAAAGTTGAGG
1968 GGTTAAATCGAGTAAAATAAAAATTGTAAA
1 GGTTAAATCGAGTAAAATAAAAATTGTAAA
1998 TGGAACATTA
Statistics
Matches: 536, Mismatches: 54, Indels: 37
0.85 0.09 0.06
Matches are distributed among these distances:
284 12 0.02
285 7 0.01
287 51 0.10
288 180 0.34
289 113 0.21
290 4 0.01
291 3 0.01
292 157 0.29
293 9 0.02
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.32
Consensus pattern (284 bp):
GGTTAAATCGAGTAAAATAAAAATTGTAAAAGGACTAAGTAGCATAAACAGAAAAGTCTGAGGAC
TATTTGATAAATAACCCATTCTCAAACTTTAAAATTACTAATATGCCCACCTTTAAATGACAAAA
AACAAAATTATTTTATTCCAAATAAATGTGGTGTATTTAATGATGGTTTTTTGGTCATATCACTT
TGAACTTTTAATATATAAGGTTAGATGTATGAGGGATTAAATCGTATAGAATAAAAGTGTTTGAG
GTATTTTCTATAAAAAAGTTGAGG
Found at i:2180 original size:15 final size:15
Alignment explanation
Indices: 2147--2189 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
2137 AAATTTAAAG
2147 ATTTTAGAAATGAAAC
1 ATTTTA-AAATGAAAC
* *
2163 ATTTTAAAATGCATC
1 ATTTTAAAATGAAAC
*
2178 ATTTCAAAATGA
1 ATTTTAAAATGA
2190 TATTAATAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
15 17 0.74
16 6 0.26
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (15 bp):
ATTTTAAAATGAAAC
Found at i:4993 original size:6 final size:6
Alignment explanation
Indices: 4982--5010 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
4972 GATGACTAAT
4982 ATTTGG ATTTGG ATTTGG ATTTGG ATTTG
1 ATTTGG ATTTGG ATTTGG ATTTGG ATTTG
5011 AACTATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.31, T:0.52
Consensus pattern (6 bp):
ATTTGG
Found at i:14706 original size:33 final size:32
Alignment explanation
Indices: 14669--14731 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
14659 TATCGGCGTC
14669 TAATGCAATAAAACGCCACTATTTAGCGGCGCT
1 TAATG-AATAAAACGCCACTATTTAGCGGCGCT
** *
14702 TAATGAATCCAATGCCACTATTTAGCGGCG
1 TAATGAATAAAACGCCACTATTTAGCGGCG
14732 TCCAACGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 22 0.81
33 5 0.19
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (32 bp):
TAATGAATAAAACGCCACTATTTAGCGGCGCT
Found at i:15513 original size:220 final size:219
Alignment explanation
Indices: 15144--15626 Score: 806
Period size: 220 Copynumber: 2.2 Consensus size: 219
15134 GTCTGATGAC
* * ** ** *
15144 TTAAACGCCCCTATTTAGCGGCGTCTGAACTAAGTAGACGCTGCTATTTGGGTGGAGTCCATCTG
1 TTAAACGCCACTATTTAGCGGCGTCTTAGGTAACAAGACGCCGCTATTTGGGTGGAGTCCATCTG
* *
15209 GGCTCCCAGTTACCACCCAATTGGGAGCCCGATTGGACCCTTCAATTTGGGGCGAAGTCACTGTC
66 GGATCCCAATTACCACCCAATTGGGAGCCCGATTGGACCCTTCAATTTGGGGCGAAGTCACTGTC
15274 CTGACTGGGAGCCGACTTCGCCCCCAACCGGGCCCCCAGGTCTCATTTCTTGTCTAATTTATTTC
131 CTGACTGGGAGCCGACTTCGCCCCCAACCGGG-CCCCAGGTCTCATTTCTTGTCTAATTTATTTC
15339 CTCATAAATGGCGGCGTCTGAAG-TG
195 CTCATAAATGGCGGCGTCTG-AGTTG
15364 TTAAACGCCACTATTTAGCGGCGTCTTAGGTAACAAGACGCCGCTATTTGGGTGGAGTCCATCTG
1 TTAAACGCCACTATTTAGCGGCGTCTTAGGTAACAAGACGCCGCTATTTGGGTGGAGTCCATCTG
* *
15429 GGATCCCAATTACCACCGAATTGGGAGCCCGGTTGGACCCTTCAATTTGGGGCGAAGTCACTGTC
66 GGATCCCAATTACCACCCAATTGGGAGCCCGATTGGACCCTTCAATTTGGGGCGAAGTCACTGTC
* *
15494 CTGACTGGGAGTCGACTTCGCCCCCAACCGGGCCCCAGGTCTCCTTTCTTGTCTAATTTATTTCC
131 CTGACTGGGAGCCGACTTCGCCCCCAACCGGGCCCCAGGTCTCATTTCTTGTCTAATTTATTTCC
*
15559 TCATAGATGGCGGCGTCTGAGTTG
196 TCATAAATGGCGGCGTCTGAGTTG
*
15583 TTAAACGCCACTATTTAGCGGCGTCTTAGGTAACACGACGCCGC
1 TTAAACGCCACTATTTAGCGGCGTCTTAGGTAACAAGACGCCGC
15627 GAAATAGTGG
Statistics
Matches: 247, Mismatches: 15, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
218 2 0.01
219 95 0.38
220 150 0.61
ACGTcount: A:0.20, C:0.28, G:0.25, T:0.27
Consensus pattern (219 bp):
TTAAACGCCACTATTTAGCGGCGTCTTAGGTAACAAGACGCCGCTATTTGGGTGGAGTCCATCTG
GGATCCCAATTACCACCCAATTGGGAGCCCGATTGGACCCTTCAATTTGGGGCGAAGTCACTGTC
CTGACTGGGAGCCGACTTCGCCCCCAACCGGGCCCCAGGTCTCATTTCTTGTCTAATTTATTTCC
TCATAAATGGCGGCGTCTGAGTTG
Found at i:15838 original size:28 final size:25
Alignment explanation
Indices: 15768--15852 Score: 79
Period size: 28 Copynumber: 3.4 Consensus size: 25
15758 CCACAGTTCT
* *
15768 CCCTTCTCCTCTCCTTCGATT--CG
1 CCCTTCTCCTCTCCATCAATTCGCG
15791 CCC-T-TCCTCTCCATCAATTCGCAG
1 CCCTTCTCCTCTCCATCAATTCGC-G
* *
15815 CGGCCTTCTCCTCTCCTTCGATTCGCG
1 C--CCTTCTCCTCTCCATCAATTCGCG
15842 CCCTTCTCCTC
1 CCCTTCTCCTC
15853 AAGAGTAACT
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
21 13 0.25
22 1 0.02
23 4 0.08
24 2 0.04
25 10 0.20
26 2 0.04
27 3 0.06
28 16 0.31
ACGTcount: A:0.07, C:0.48, G:0.11, T:0.34
Consensus pattern (25 bp):
CCCTTCTCCTCTCCATCAATTCGCG
Found at i:15894 original size:17 final size:17
Alignment explanation
Indices: 15872--15907 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15862 TCATCATTTG
*
15872 TTTCCTTTTCCTTTTCC
1 TTTCCTTCTCCTTTTCC
*
15889 TTTCCTTCTCTTTTTCC
1 TTTCCTTCTCCTTTTCC
15906 TT
1 TT
15908 CCGTCAGTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTCCTTCTCCTTTTCC
Found at i:15981 original size:28 final size:25
Alignment explanation
Indices: 15919--16003 Score: 88
Period size: 28 Copynumber: 3.4 Consensus size: 25
15909 CGTCAGTTCT
* *
15919 CCCTTCTCCTCTCCTTCAATT--CG
1 CCCTTCTCCTCTCCATCGATTCGCG
15942 CCC-T-TCCTCTCCATCGATTCGCAG
1 CCCTTCTCCTCTCCATCGATTCGC-G
*
15966 CGGCCTTCTCCTCTCCTTCGATTCGCG
1 C--CCTTCTCCTCTCCATCGATTCGCG
15993 CCCTTCTCCTC
1 CCCTTCTCCTC
16004 AAGAGTAAGT
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
21 13 0.25
22 1 0.02
23 4 0.08
24 2 0.04
25 10 0.19
26 2 0.04
27 3 0.06
28 17 0.33
ACGTcount: A:0.07, C:0.48, G:0.11, T:0.34
Consensus pattern (25 bp):
CCCTTCTCCTCTCCATCGATTCGCG
Found at i:16034 original size:6 final size:6
Alignment explanation
Indices: 16023--16058 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
16013 TCATCATTTG
*
16023 TTTCCT TTTCCT TTTCC- TTTCCT TCTCCT TTTCCT T
1 TTTCCT TTTCCT TTTCCT TTTCCT TTTCCT TTTCCT T
16059 CCGTCAGTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (6 bp):
TTTCCT
Found at i:16035 original size:151 final size:151
Alignment explanation
Indices: 15761--16071 Score: 586
Period size: 151 Copynumber: 2.1 Consensus size: 151
15751 TTTTTCTCCA
*
15761 CAGTTCTCCCTTCTCCTCTCCTTCGATTCGCCCTTCCTCTCCATCAATTCGCAGCGGCCTTCTCC
1 CAGTTCTCCCTTCTCCTCTCCTTCAATTCGCCCTTCCTCTCCATCAATTCGCAGCGGCCTTCTCC
15826 TCTCCTTCGATTCGCGCCCTTCTCCTCAAGAGTAACTCATCATTTGTTTCCTTTTCCTTTTCCTT
66 TCTCCTTCGATTCGCGCCCTTCTCCTCAAGAGTAACTCATCATTTGTTTCCTTTTCCTTTTCCTT
*
15891 TCCTTCTCTTTTTCCTTCCGT
131 TCCTTCTCCTTTTCCTTCCGT
*
15912 CAGTTCTCCCTTCTCCTCTCCTTCAATTCGCCCTTCCTCTCCATCGATTCGCAGCGGCCTTCTCC
1 CAGTTCTCCCTTCTCCTCTCCTTCAATTCGCCCTTCCTCTCCATCAATTCGCAGCGGCCTTCTCC
*
15977 TCTCCTTCGATTCGCGCCCTTCTCCTCAAGAGTAAGTCATCATTTGTTTCCTTTTCCTTTTCCTT
66 TCTCCTTCGATTCGCGCCCTTCTCCTCAAGAGTAACTCATCATTTGTTTCCTTTTCCTTTTCCTT
16042 TCCTTCTCCTTTTCCTTCCGT
131 TCCTTCTCCTTTTCCTTCCGT
16063 CAGTTCTCC
1 CAGTTCTCC
16072 TTTCGTTTTC
Statistics
Matches: 156, Mismatches: 4, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
151 156 1.00
ACGTcount: A:0.09, C:0.40, G:0.10, T:0.41
Consensus pattern (151 bp):
CAGTTCTCCCTTCTCCTCTCCTTCAATTCGCCCTTCCTCTCCATCAATTCGCAGCGGCCTTCTCC
TCTCCTTCGATTCGCGCCCTTCTCCTCAAGAGTAACTCATCATTTGTTTCCTTTTCCTTTTCCTT
TCCTTCTCCTTTTCCTTCCGT
Found at i:16045 original size:17 final size:17
Alignment explanation
Indices: 16023--16058 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
16013 TCATCATTTG
*
16023 TTTCCTTTTCCTTTTCC
1 TTTCCTTCTCCTTTTCC
16040 TTTCCTTCTCCTTTTCC
1 TTTCCTTCTCCTTTTCC
16057 TT
1 TT
16059 CCGTCAGTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTCCTTCTCCTTTTCC
Done.