Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010115.1 Corchorus capsularis cultivar CVL-1 contig10136, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25436

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4552--4646
16
6.0
16
75
9
70
53
27
8
10
1.64
4558--4646
32
2.8
31
79
3
115
55
28
7
8
1.59
4795--4871
32
2.4
32
95
0
136
38
36
10
14
1.80
4802--4862
15
3.9
15
70
10
50
39
34
8
18
1.80
5205--5271
23
2.9
23
88
0
98
16
14
23
44
1.85
5221--5339
59
2.0
59
95
0
211
13
15
22
48
1.79
5279--5329
23
2.2
23
82
0
66
13
15
25
45
1.83
5649--5691
22
2.0
22
90
4
70
81
6
4
6
0.98
5650--5688
10
3.9
10
82
0
51
87
5
2
5
0.75
10700--10740
19
2.1
20
86
4
57
39
2
48
9
1.49
13592--13644
22
2.5
21
78
3
52
37
7
20
33
1.81
13674--13719
22
2.1
22
91
0
74
45
10
4
39
1.59
13797--13900
22
4.9
22
71
15
83
37
10
17
34
1.84
14053--14097
22
2.0
22
86
0
63
46
6
11
35
1.66
14163--14265
22
4.7
22
73
13
86
36
6
14
41
1.73
14157--14265
44
2.5
44
83
0
137
36
6
16
40
1.74
14205--14266
22
2.8
22
83
9
90
37
8
17
37
1.80
15599--16609
120
8.4
120
86
2
1073
25
44
6
23
1.78
15599--16609
30
33.8
30
82
2
947
25
44
6
23
1.78
17074--17106
2
16.5
2
100
0
66
48
0
0
51
1.00
18490--18539
22
2.3
23
83
13
61
26
26
28
20
1.99
19800--19824
12
2.1
12
100
0
50
60
0
24
16
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21071--21293
111
2.0
111
97
0
419
34
21
13
30
1.91
24592--24625
17
1.9
17
88
5
50
70
2
0
26
1.01
24543--24644
52
2.0
51
86
5
143
60
6
2
29
1.37

Tables:   1

The End!