Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010118.1 Corchorus capsularis cultivar CVL-1 contig10139, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107395

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2008--2045
14
2.6
14
88
12
51
0
13
5
81
0.85
2005--2049
17
2.7
17
89
3
65
0
13
4
82
0.82
5606--5909
87
3.5
86
87
2
441
36
14
5
42
1.70
7795--7860
29
2.3
28
84
10
80
34
19
6
39
1.77
8943--8975
7
4.7
7
100
0
66
45
0
54
0
0.99
17706--17835
33
3.9
33
96
0
242
46
24
15
13
1.82
20053--20096
12
3.3
13
81
15
54
13
6
0
79
0.92
24834--26175
669
2.0
671
97
0
2526
24
19
18
37
1.94
27882--27915
14
2.4
14
90
5
50
58
0
8
32
1.29
32598--32682
42
2.0
42
86
4
118
22
24
30
22
1.99
33436--33470
17
2.1
17
88
0
52
42
14
22
20
1.88
38956--39052
45
2.2
45
88
5
144
37
3
23
36
1.71
45348--45600
121
2.1
117
81
5
274
41
18
12
26
1.87
45543--45609
34
2.0
34
85
11
93
43
19
10
26
1.83
45594--45641
24
2.0
25
87
4
71
35
10
18
35
1.85
45578--45745
66
2.5
66
85
1
221
36
17
16
28
1.92
45863--46031
84
2.0
83
88
1
248
45
17
11
25
1.82
46780--47032
128
2.0
128
82
7
309
39
9
21
28
1.86
49128--49288
66
2.4
66
84
4
200
35
16
17
30
1.92
49408--49574
84
2.0
84
84
2
219
46
14
11
26
1.80
53290--53320
15
2.1
15
100
0
62
19
19
25
35
1.95
54251--54275
11
2.3
11
100
0
50
40
0
8
52
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54369--54411
19
2.3
19
100
0
86
27
34
18
18
1.95
65273--65334
32
1.9
32
93
0
106
30
20
11
37
1.88
70077--70103
6
4.5
6
100
0
54
55
14
0
29
1.40
73184--73246
21
3.0
21
70
21
60
12
22
47
17
1.81
76919--76951
6
5.5
6
100
0
66
54
15
0
30
1.41
77888--77912
10
2.5
10
100
0
50
24
8
20
48
1.76
84484--84510
6
4.5
6
100
0
54
18
14
0
66
1.25
84876--84952
40
1.9
40
89
5
120
31
2
7
58
1.40
87230--87263
17
2.0
17
88
0
50
50
2
29
17
1.61
87756--87799
21
2.1
21
86
0
61
40
0
29
29
1.57
94231--94362
42
3.1
41
77
6
131
39
18
15
26
1.91
94466--94546
42
1.9
42
85
5
110
37
17
17
28
1.92
95313--95356
19
2.4
19
85
7
56
34
4
52
9
1.54
103714--103743
2
15.0
2
92
0
51
53
0
0
46
1.00
104255--104319
32
2.0
32
96
0
121
32
18
10
38
1.85
105916--105992
40
1.9
40
91
0
127
29
3
7
58
1.44

Tables:   1

The End!