Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010119.1 Corchorus capsularis cultivar CVL-1 contig10140, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23668

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2426--2469
21
2.1
21
86
0
61
40
0
29
29
1.57
3715--3743
14
2.1
14
100
0
58
24
13
34
27
1.93
10049--10080
13
2.5
13
94
0
55
21
3
15
59
1.50
12971--13044
35
2.1
36
97
2
141
17
13
22
45
1.83
13200--13279
40
2.0
40
95
0
142
30
17
17
35
1.93
15272--15361
42
2.1
43
87
4
130
48
16
10
24
1.76
15412--15510
42
2.4
42
92
0
171
43
16
13
27
1.84
15790--15919
38
3.6
38
72
13
119
43
19
8
28
1.80
15763--15921
72
2.2
71
84
2
203
43
18
8
28
1.80
16308--16412
42
2.5
42
85
0
138
41
16
15
26
1.87
16424--16492
34
2.0
34
82
0
84
43
23
11
21
1.85
16687--16819
38
3.6
37
75
8
137
42
24
10
22
1.84
16542--16750
114
1.8
116
84
2
287
42
20
13
24
1.88
16680--16855
72
2.4
72
82
1
219
44
22
10
22
1.83
17587--17650
34
1.9
34
87
3
94
50
20
9
20
1.75
20404--20456
21
2.6
21
84
3
63
26
32
32
9
1.88

Tables:   1

The End!