Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001012.1 Corchorus capsularis cultivar CVL-1 contig01012, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18415
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33


Found at i:7100 original size:14 final size:14

Alignment explanation


    Indices: 7081--7107  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       7071 TTGGATCGAG

                          
       7081 TCGCCCAATTAGAT
          1 TCGCCCAATTAGAT

                         
       7095 TCGCCCAATTAGA
          1 TCGCCCAATTAGA

       7108 CTTTTATTCT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.30, C:0.30, G:0.15, T:0.26


Consensus pattern (14 bp):   
TCGCCCAATTAGAT

Found at i:14912 original size:1 final size:1

Alignment explanation


    Indices: 14906--14930  Score: 50
    Period size: 1  Copynumber: 25.0  Consensus size: 1

      14896 TATTTTAGTC

                                     
      14906 TTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTT

      14931 GTGAGTTTAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   24  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Done.