genome.fa.s10121.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010121.1 Corchorus capsularis cultivar CVL-1 contig10142, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62604

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4258--4390	18	7.4	18	83	0	113	10	21	41	27	1.85
4268--4388	36	3.4	35	82	0	125	10	19	40	28	1.85
4275--4402	54	2.4	54	91	0	202	10	19	40	28	1.85
9474--9498	2	12.5	2	100	0	50	48	0	52	0	1.00
9964--10012	24	2.0	24	100	0	98	48	0	4	46	1.20
32565--32606	21	2.0	21	95	0	75	26	9	30	33	1.88
39146--39245	22	4.5	22	70	9	78	35	12	7	46	1.68
39283--39697	22	19.2	22	68	12	198	34	17	9	38	1.82
39578--39628	19	2.6	20	90	6	86	25	17	11	45	1.83
39737--39941	22	9.3	22	69	9	105	32	14	9	42	1.78
39707--39858	66	2.3	66	82	4	182	32	13	10	42	1.79
39964--40321	22	16.5	22	69	14	131	36	18	9	35	1.83
40139--40322	22	8.3	22	76	11	151	39	19	9	32	1.83
40494--40531	19	2.0	20	85	15	53	63	2	5	28	1.30
40701--40766	31	2.1	31	94	0	114	48	4	19	27	1.68
40968--41024	28	2.0	28	90	6	89	24	17	15	42	1.88
41714--41770	28	2.0	28	93	0	96	42	15	19	22	1.89
43889--44061	43	4.2	41	77	11	142	31	13	16	38	1.87
43917--44061	43	3.4	43	81	3	152	31	13	15	40	1.86
44043--44438	47	8.7	47	83	6	519	39	11	10	39	1.75
44068--44438	130	2.8	131	85	5	467	39	11	9	39	1.74
44047--44383	177	1.9	177	91	0	548	39	11	10	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48821--48895	36	2.1	36	100	0	150	37	16	8	38	1.78
56362--56402	7	5.9	7	100	0	82	58	26	14	0	1.37
58337--58371	15	2.3	15	90	9	54	8	2	20	68	1.29

Tables:   1

The End!