Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010122.1 Corchorus capsularis cultivar CVL-1 contig10143, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2462
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37


Found at i:54 original size:33 final size:32

Alignment explanation


    Indices: 2--71  Score: 104
    Period size: 33  Copynumber: 2.2  Consensus size: 32

          1 A

                *                            
          2 GTGGAAGAGCCGCCCTAGTGGGGAGGCTCCGCC
          1 GTGGCAGAGCCGCCCTAGTGGGGAGGCTCCG-C

                        * *                 
         35 GTGGCAGAGCCGTCTTAGTGGGGAGGCTCCGC
          1 GTGGCAGAGCCGCCCTAGTGGGGAGGCTCCGC

                 
         67 GTGGC
          1 GTGGC

         72 TAAGGGAAAA


Statistics
Matches: 34,  Mismatches: 3, Indels: 1
        0.89            0.08        0.03

Matches are distributed among these distances:
  32    6  0.18
  33   28  0.82

ACGTcount: A:0.13, C:0.27, G:0.44, T:0.16


Consensus pattern (32 bp):   
GTGGCAGAGCCGCCCTAGTGGGGAGGCTCCGC
Done.