Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010124.1 Corchorus capsularis cultivar CVL-1 contig10145, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18757

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
228--296
27
2.6
27
100
0
138
47
20
14
17
1.82
570--603
17
2.0
17
88
0
50
14
0
8
76
1.01
654--984
47
7.0
47
88
1
493
36
18
23
21
1.95
1095--1385
69
4.2
68
78
9
279
27
17
26
27
1.98
1124--1385
135
1.9
135
89
1
400
28
17
27
27
1.97
2420--2490
6
13.2
5
81
15
56
1
19
0
78
0.82
2437--2481
6
7.8
6
95
5
76
0
15
0
84
0.62
2806--2853
20
2.3
22
85
7
64
0
22
0
77
0.78
2800--2863
21
3.0
20
80
11
65
1
21
0
76
0.87
2805--2854
11
4.6
11
76
14
50
0
22
0
78
0.76
2817--2866
26
1.9
26
84
15
68
0
20
0
80
0.72
2826--2855
12
2.5
12
88
0
51
0
16
0
83
0.65
2818--2867
20
2.4
22
83
9
70
0
22
0
78
0.76
3215--3332
46
2.6
45
82
6
150
35
19
9
35
1.84
3228--3332
46
2.3
46
90
4
160
34
18
9
38
1.83
3351--3422
28
2.6
28
79
16
78
4
27
0
68
1.08
12039--12108
34
2.1
34
94
0
122
21
22
18
37
1.94
12271--12299
15
1.9
15
100
0
58
44
20
6
27
1.77
15911--15954
7
6.3
7
97
0
70
29
13
36
20
1.91
16405--16449
16
2.8
17
80
12
51
53
0
0
46
1.00

Tables:   1

The End!